Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2598 ATGAGTGAACATGGATCAAAGGGAGGGGCCAAGGACGATGGCGGAAATGTCAAGTACCGAGGCGTTCGCTGCCGGCCATGGGGAAAATTTGCGGCCGAGATTCGTGATTCCAATAGGCAAGGTCAGAGGATATGGCTTGGCACTTTCAACACTGCTGAAGAAGCTGCAAGAGCTTATGATAGAGCTGCTTTTAATATGAGAGGTTCATTTGCAATTCTTAATTTTCCAAATGAATATAATATGTTTGCTGGTGCCGGTTCCGGTGCCGGTGCCGGTTCTGGTTCTGGTTCTGGTTCATCATCTTCAAGGAATGAAAATGCTGGCAATGGAAGACAAGTGTTTGAGTTTGAGTACTTGGATGATAACTTATTGGAGGAGCTTCTTGATGTTGAGGAGAAAAAGAATAAAGGATCCTGA 417 0.4508 MSEHGSKGGAKDDGGNVKYRGVRCRPWGKFAAEIRDSNRQGQRIWLGTFNTAEEAARAYDRAAFNMRGSFAILNFPNEYNMFAGAGSGAGAGSGSGSGSSSSRNENAGNGRQVFEFEYLDDNLLEELLDVEEKKNKGS* 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2598 138 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Mtr1g2598 138 PRINTS Ethylene responsive element binding protein signature 42 58 IPR001471 GO:0003700|GO:0006355
Mtr1g2598 138 Pfam AP2 domain 18 68 IPR001471 GO:0003700|GO:0006355
Mtr1g2598 138 MobiDBLite consensus disorder prediction 86 108 - -
Mtr1g2598 138 MobiDBLite consensus disorder prediction 92 108 - -
Mtr1g2598 138 CDD AP2 18 77 IPR001471 GO:0003700|GO:0006355
Mtr1g2598 138 SMART rav1_2 18 82 IPR001471 GO:0003700|GO:0006355
Mtr1g2598 138 ProSiteProfiles AP2/ERF domain profile. 18 76 IPR001471 GO:0003700|GO:0006355
Mtr1g2598 138 PANTHER OS09G0571700 PROTEIN 12 132 - -
Mtr1g2598 138 SUPERFAMILY DNA-binding domain 18 77 IPR016177 GO:0003677
Mtr1g2598 138 PANTHER DNA-BINDING DOMAIN 12 132 IPR044808 GO:0003700|GO:0009873
Mtr1g2598 138 Gene3D AP2/ERF domain 17 77 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2598 Mtr-Chr1 36926046 36926698 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2598 13 134 AP2-EREBP Transcription Factor Family AT3G23230 62.400 2.26e-45 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Mtr1g2598 AP2 2.6e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2598 - - gmx:100775830 143.665