Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2597 ATGGATCTTGTAAATAGAAAATACTTGATCCATTTTTCATCACAAGCTCTTGGTCCAACAAGTTCAAGTTCAATTTTTCATCCTCCTCATATGCATCATTCAAGCACAAGTTTTCCAATCATTGCAATTGCTATTATAGGAATATTAGCTACAATTTTCTTGCTTGTTTCCTACTACATCTTTGTGATCAAATGTTGTCTAAATTGGCACCGTATCGATCTTCTACGACGTTTTTCTCCCTCTAGAAGACGACAAGATCCAACAACGATACATTCACCGGGGATAGAGCCTCGTGGTCTAGACGAAGCAGTGATTCGGTTAATACCGGTTATTCAATTCAAAGCAGAAGAAGGAAATAAAGACTCTGCTGGTTCAGAGAGTTTTTGTGAATGTGCTGTTTGTTTGAATGAGTTTCAACAAGATGAAAAACTTAGGATTATACCAAATTGTAGCCATGTTTTTCACATTGATTGCATTGATGTTTGGTTACAAAACAATGCTAATTGTCCACTTTGTAGAACAAGCATTTCATTGACAAGTAGATTCCATTTTGATCAAATGCTTACACAAGGGCCATTTTCATCTCAAGATCAAAATCCAACTAGAGAAAATCTCATTGGTGGTGATGAAGATTTTGTTGTCATTGAATTGAGTAACAATAATGCTATGGAGTCACCATTACCATTACCAAGACCATGTCCTATTAGTCCTTCACCAAGGAAAATGTTGGATAAGAAAGGAAGGAAAAAGTTGCATAAAGTGACAAGTATGGGAGATGAATGTATTGATATTAGAGCAACAAAAGATGAACAATTTTCAGTTCAACCAATTAGAAGATCATTTTCAATGGATTCATCAGGGGATAGACATTTCTATTTAGCAGTTCAAGAAGCTCTGCAGCAACAAAAGAGGCAAGTCAATGAAGTCAACAACACCATTGAAGGGTCTAGTGGTGGAAGTGGAAGAGTCAAGAAATCATTCTTTTCATTTGGATATGGAAGTAGATCTAGAAGTTCTTCTGTTCAACCTGTTTATTTAGATTCTTGA 1047 0.3582 MDLVNRKYLIHFSSQALGPTSSSSIFHPPHMHHSSTSFPIIAIAIIGILATIFLLVSYYIFVIKCCLNWHRIDLLRRFSPSRRRQDPTTIHSPGIEPRGLDEAVIRLIPVIQFKAEEGNKDSAGSESFCECAVCLNEFQQDEKLRIIPNCSHVFHIDCIDVWLQNNANCPLCRTSISLTSRFHFDQMLTQGPFSSQDQNPTRENLIGGDEDFVVIELSNNNAMESPLPLPRPCPISPSPRKMLDKKGRKKLHKVTSMGDECIDIRATKDEQFSVQPIRRSFSMDSSGDRHFYLAVQEALQQQKRQVNEVNNTIEGSSGGSGRVKKSFFSFGYGSRSRSSSVQPVYLDS* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2597 348 Pfam Ring finger domain 130 173 IPR001841 -
Mtr1g2597 348 MobiDBLite consensus disorder prediction 226 249 - -
Mtr1g2597 348 ProSiteProfiles Zinc finger RING-type profile. 131 173 IPR001841 -
Mtr1g2597 348 CDD RING-H2_PA-TM-RING 130 173 - -
Mtr1g2597 348 PANTHER RING-H2 FINGER PROTEIN ATL16 15 347 - -
Mtr1g2597 348 SUPERFAMILY RING/U-box 130 179 - -
Mtr1g2597 348 SMART ring_2 131 172 IPR001841 -
Mtr1g2597 348 Coils Coil 292 312 - -
Mtr1g2597 348 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 89 178 IPR013083 -
Mtr1g2597 348 PANTHER RING-H2 FINGER PROTEIN ATL16 15 347 IPR044600 GO:0016567|GO:0016740
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2597 Mtr-Chr1 36904430 36906057 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2597 29 347 C3H Transcription Factor Family AT1G04360 52.235 1.91e-100 300
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2597 - - gmx:100794749 451.44