Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2583 CATCAACAAAAGCATCATCTTCTTCTTCTTAAGTGTAGAAATACTACAACAGCAGTTCTGGCTAATCCTTGGTGGACAATTCAAGGAGGGTTATCTGGGGTTGACCCAGGAACCCACTCCCCAAGTGATTTAAACAAACACCACAACACAAACCTAACGATCAACGAAAATCACGATGATGAAGAAGAAGACGATGACAACAGAGATGAACCTAGAGAAGGTGCAGTCGAAGTTGGTAACCGAAGACCAAGAGGAAGACCACCTGGATCCAAAAACAGACCAAAACCACCTATCTTTGTAACAAGAGATAGCCCAAATGCTTTGAAGAGCCATGTCATGGAGGTAGCCGGTGGAGCTGATATAGCAGAAAGTGTAGCACAATTCGCAAGGAGGCGTCAACGCGGTGTTTGTGTTCTCAGTGGAAGTGGCTCTGTAGCTAATGTTACTCTTAGACAACCTTCAGCTCCTGGTGCCGTTGTAGCACTTCATGGCAGGTTTGAGATTTTGTCCTTAACCGGGACATTTCTACCTGGTCCTGCTCCACCAGGTTCAACTGGTCTTACAGTGTACCTGGCTGGAGGTCAGGGCCAGGTTGTTGGAGGTTGTGTTGTTGGAACTCTTGTTGCAGTTGGACCTGTTATGCTTATTGCCGCTACTTTTACTAATGCTACTTATGAGAGACTTCCACTTGATGACGATGATAATGATAATAATGAAGGGCCTAATTCTGCAGGCGGTGTGCAAGGTGGAGGAGCGTCGACTGGTGGATCGCCTCCACCAGGAATTGGTCATCAGTTGCAGGGTGGGCTTCCAGATCCTTCTTCCATGCCTTTGTATAATTTGCCACCAAATTTGTTGCCTAATAATGGAGGGCAGATGGGACATGAGGCTCTTGCCTGGGCTGCTGCTCATGGAAGACCACCTTATTGA 930 0.4699 HQQKHHLLLLKCRNTTTAVLANPWWTIQGGLSGVDPGTHSPSDLNKHHNTNLTINENHDDEEEDDDNRDEPREGAVEVGNRRPRGRPPGSKNRPKPPIFVTRDSPNALKSHVMEVAGGADIAESVAQFARRRQRGVCVLSGSGSVANVTLRQPSAPGAVVALHGRFEILSLTGTFLPGPAPPGSTGLTVYLAGGQGQVVGGCVVGTLVAVGPVMLIAATFTNATYERLPLDDDDNDNNEGPNSAGGVQGGGASTGGSPPPGIGHQLQGGLPDPSSMPLYNLPPNLLPNNGGQMGHEALAWAAAHGRPPY* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2583 309 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 38 309 IPR014476 GO:0003680
Mtr1g2583 309 MobiDBLite consensus disorder prediction 36 51 - -
Mtr1g2583 309 PANTHER DNA-BINDING PROTEIN-LIKE 38 309 - -
Mtr1g2583 309 Gene3D - 109 236 - -
Mtr1g2583 309 SUPERFAMILY AF0104/ALDC/Ptd012-like 106 233 - -
Mtr1g2583 309 PIRSF ESCAROLA 28 309 IPR014476 GO:0003680
Mtr1g2583 309 CDD DUF296 109 192 IPR005175 -
Mtr1g2583 309 ProSiteProfiles PPC domain profile profile. 105 242 IPR005175 -
Mtr1g2583 309 MobiDBLite consensus disorder prediction 229 283 - -
Mtr1g2583 309 MobiDBLite consensus disorder prediction 36 103 - -
Mtr1g2583 309 Pfam Plants and Prokaryotes Conserved (PCC) domain 110 222 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2583 Mtr-Chr1 36725995 36727201 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2583 20 309 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 60.667 1.73e-103 302
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2583 - - var:108341460 359.377