Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2575 ATGGATTCGGATCAAGGAAAGCTTTTCATCGGTGGGATTTCATGGGATACGAATGAGGAGAAGCTGAAGGAGCATTTCAGCAATTATGGTGATGTTTTGAACACTTCTGTTATGAGAGAGAAGAACACTGGTAAACCTAGAGGCTTTGGTTTCGTGGTTTTCTCAGATCCTTCTGTTCTTGATAGGGTTCTTGAAGACAAACATGTTATTGATGGCAGAACGGTTGATGCCAAGAGGGCTTTCTCAAGAGAGGACCAACAGATTTCTGTCTCTTCAAGATCTGGAAACTCCAATTCTGGTATGAATTCTGGGAATGGTGGAAATATGAGAACCAAAAAGATATTTGTTGGAGGGTTGCCTCCCACTCTGGCTGAAGAAAAATTCCGTCAGTACTTTGAGGCTTATGGACATGTAACTGATGTCGTAGTTATGTATGACCAGAATACTGGACGACCACGAGGATTTGGGTTTATTACTTTTGATACTGAGGAGGCAGTTGATAGGGTTTTGCACAAGACATTTCATGATTTAAATGGTAAACAAGTAGAGGTAAAGCGTGCACTCCCAAAGGATGCCAATCCTGGTGCAAATAGTCGTATGGGTGGTGCTGGAGGTGGTAGTGGCGGAATGGGTGGTTATCAAGGGTATGGAGCTTCTGGTGGAAACCAAAATGCATATGATGGTCGTTCAGATTCTAGGTATATGCAGCCTCAAAGTGCTGCAGGTGGATTCCCACCTTATGGATCCTCTGCATACAGTGCTGCTGCTGGATATGGGTATGGTTCGGCTAGCAATGGCCTTGGTTATGGTGCAGCATATGGAAGTTATGGTGGTGCCGCTGCTGGTTATGGCGGACCTGCTGCTGCAACATATGGGAACCCAAATGTCCCTAATGCTGCTTATGCTGGTGGTGGCCCAAGGAGTTCATGGCCTGCTCAGGCTCCCTCTGGCTATGGCTCTATGGGTTACGGTAACACTGCTCCTTGGGGTGCTCCAAGTGGTGGTGCTGGATCTGGTGCAGCAACTGCAGGTCAATCTCCCAGTGCAGCGGCTGGATATGGGAATCAAGGTTATGGGTATGGTGGTTATGGTGGCGGGTATGGTGCAAGTGATAATTCTTATGGGAATCCTGGTGTATATGGTGCTGTTGGTGGGCGTACTGGGAGTGCTCCAAATAGTAATGCTAGTGGTCAGGGTGGTAGTGAACTGCAAGGTAGTGGTGGCAGTGGCAGCTATATGGGCAGCGGCTATGGGGACACAAATGGAAATTCTGGCTATGGAAATGCAGCTTGGAGATCTGAACAGGCTCAAGCATCTGGTAATTATGGGACTCCTCAGGGAAATGGGGGGCAAGCTGGTTATGGTGGTGGCTATGGTGCTGCCCAGTCTCGACAAGCCCAACAGCAGTAA 1410 0.4794 MDSDQGKLFIGGISWDTNEEKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPSVLDRVLEDKHVIDGRTVDAKRAFSREDQQISVSSRSGNSNSGMNSGNGGNMRTKKIFVGGLPPTLAEEKFRQYFEAYGHVTDVVVMYDQNTGRPRGFGFITFDTEEAVDRVLHKTFHDLNGKQVEVKRALPKDANPGANSRMGGAGGGSGGMGGYQGYGASGGNQNAYDGRSDSRYMQPQSAAGGFPPYGSSAYSAAAGYGYGSASNGLGYGAAYGSYGGAAAGYGGPAAATYGNPNVPNAAYAGGGPRSSWPAQAPSGYGSMGYGNTAPWGAPSGGAGSGAATAGQSPSAAAGYGNQGYGYGGYGGGYGASDNSYGNPGVYGAVGGRTGSAPNSNASGQGGSELQGSGGSGSYMGSGYGDTNGNSGYGNAAWRSEQAQASGNYGTPQGNGGQAGYGGGYGAAQSRQAQQQ* 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2575 469 MobiDBLite consensus disorder prediction 390 448 - -
Mtr1g2575 469 SMART rrm1_1 7 78 IPR000504 GO:0003723
Mtr1g2575 469 SMART rrm1_1 113 185 IPR000504 GO:0003723
Mtr1g2575 469 SUPERFAMILY RNA-binding domain, RBD 3 110 IPR035979 GO:0003676
Mtr1g2575 469 Gene3D - 1 92 IPR012677 -
Mtr1g2575 469 SUPERFAMILY RNA-binding domain, RBD 111 220 IPR035979 GO:0003676
Mtr1g2575 469 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 189 IPR000504 GO:0003723
Mtr1g2575 469 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Mtr1g2575 469 MobiDBLite consensus disorder prediction 390 469 - -
Mtr1g2575 469 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 172 IPR000504 GO:0003723
Mtr1g2575 469 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Mtr1g2575 469 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 1 467 - -
Mtr1g2575 469 MobiDBLite consensus disorder prediction 81 109 - -
Mtr1g2575 469 MobiDBLite consensus disorder prediction 84 109 - -
Mtr1g2575 469 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Mtr1g2575 469 CDD RRM2_DAZAP1 110 189 IPR034131 GO:0003723
Mtr1g2575 469 Gene3D - 107 230 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2575 Mtr-Chr1 36618972 36622090 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2575 8 200 Eukaryotic Initiation Factors Gene Family AT2G23350 23.383 4.22e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2575 K14411 - gmx:100811267 584.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g2575 1 36618972 36622090 Mtr1g2575 1 36618972 36622090 ECH