Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mtr1g2575 | ATGGATTCGGATCAAGGAAAGCTTTTCATCGGTGGGATTTCATGGGATACGAATGAGGAGAAGCTGAAGGAGCATTTCAGCAATTATGGTGATGTTTTGAACACTTCTGTTATGAGAGAGAAGAACACTGGTAAACCTAGAGGCTTTGGTTTCGTGGTTTTCTCAGATCCTTCTGTTCTTGATAGGGTTCTTGAAGACAAACATGTTATTGATGGCAGAACGGTTGATGCCAAGAGGGCTTTCTCAAGAGAGGACCAACAGATTTCTGTCTCTTCAAGATCTGGAAACTCCAATTCTGGTATGAATTCTGGGAATGGTGGAAATATGAGAACCAAAAAGATATTTGTTGGAGGGTTGCCTCCCACTCTGGCTGAAGAAAAATTCCGTCAGTACTTTGAGGCTTATGGACATGTAACTGATGTCGTAGTTATGTATGACCAGAATACTGGACGACCACGAGGATTTGGGTTTATTACTTTTGATACTGAGGAGGCAGTTGATAGGGTTTTGCACAAGACATTTCATGATTTAAATGGTAAACAAGTAGAGGTAAAGCGTGCACTCCCAAAGGATGCCAATCCTGGTGCAAATAGTCGTATGGGTGGTGCTGGAGGTGGTAGTGGCGGAATGGGTGGTTATCAAGGGTATGGAGCTTCTGGTGGAAACCAAAATGCATATGATGGTCGTTCAGATTCTAGGTATATGCAGCCTCAAAGTGCTGCAGGTGGATTCCCACCTTATGGATCCTCTGCATACAGTGCTGCTGCTGGATATGGGTATGGTTCGGCTAGCAATGGCCTTGGTTATGGTGCAGCATATGGAAGTTATGGTGGTGCCGCTGCTGGTTATGGCGGACCTGCTGCTGCAACATATGGGAACCCAAATGTCCCTAATGCTGCTTATGCTGGTGGTGGCCCAAGGAGTTCATGGCCTGCTCAGGCTCCCTCTGGCTATGGCTCTATGGGTTACGGTAACACTGCTCCTTGGGGTGCTCCAAGTGGTGGTGCTGGATCTGGTGCAGCAACTGCAGGTCAATCTCCCAGTGCAGCGGCTGGATATGGGAATCAAGGTTATGGGTATGGTGGTTATGGTGGCGGGTATGGTGCAAGTGATAATTCTTATGGGAATCCTGGTGTATATGGTGCTGTTGGTGGGCGTACTGGGAGTGCTCCAAATAGTAATGCTAGTGGTCAGGGTGGTAGTGAACTGCAAGGTAGTGGTGGCAGTGGCAGCTATATGGGCAGCGGCTATGGGGACACAAATGGAAATTCTGGCTATGGAAATGCAGCTTGGAGATCTGAACAGGCTCAAGCATCTGGTAATTATGGGACTCCTCAGGGAAATGGGGGGCAAGCTGGTTATGGTGGTGGCTATGGTGCTGCCCAGTCTCGACAAGCCCAACAGCAGTAA | 1410 | 0.4794 | MDSDQGKLFIGGISWDTNEEKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPSVLDRVLEDKHVIDGRTVDAKRAFSREDQQISVSSRSGNSNSGMNSGNGGNMRTKKIFVGGLPPTLAEEKFRQYFEAYGHVTDVVVMYDQNTGRPRGFGFITFDTEEAVDRVLHKTFHDLNGKQVEVKRALPKDANPGANSRMGGAGGGSGGMGGYQGYGASGGNQNAYDGRSDSRYMQPQSAAGGFPPYGSSAYSAAAGYGYGSASNGLGYGAAYGSYGGAAAGYGGPAAATYGNPNVPNAAYAGGGPRSSWPAQAPSGYGSMGYGNTAPWGAPSGGAGSGAATAGQSPSAAAGYGNQGYGYGGYGGGYGASDNSYGNPGVYGAVGGRTGSAPNSNASGQGGSELQGSGGSGSYMGSGYGDTNGNSGYGNAAWRSEQAQASGNYGTPQGNGGQAGYGGGYGAAQSRQAQQQ* | 470 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mtr1g2575 | 469 | MobiDBLite | consensus disorder prediction | 390 | 448 | - | - | |
Mtr1g2575 | 469 | SMART | rrm1_1 | 7 | 78 | IPR000504 | GO:0003723 | |
Mtr1g2575 | 469 | SMART | rrm1_1 | 113 | 185 | IPR000504 | GO:0003723 | |
Mtr1g2575 | 469 | SUPERFAMILY | RNA-binding domain, RBD | 3 | 110 | IPR035979 | GO:0003676 | |
Mtr1g2575 | 469 | Gene3D | - | 1 | 92 | IPR012677 | - | |
Mtr1g2575 | 469 | SUPERFAMILY | RNA-binding domain, RBD | 111 | 220 | IPR035979 | GO:0003676 | |
Mtr1g2575 | 469 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 112 | 189 | IPR000504 | GO:0003723 | |
Mtr1g2575 | 469 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 6 | 82 | IPR000504 | GO:0003723 | |
Mtr1g2575 | 469 | MobiDBLite | consensus disorder prediction | 390 | 469 | - | - | |
Mtr1g2575 | 469 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 114 | 172 | IPR000504 | GO:0003723 | |
Mtr1g2575 | 469 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 8 | 75 | IPR000504 | GO:0003723 | |
Mtr1g2575 | 469 | PANTHER | HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 | 1 | 467 | - | - | |
Mtr1g2575 | 469 | MobiDBLite | consensus disorder prediction | 81 | 109 | - | - | |
Mtr1g2575 | 469 | MobiDBLite | consensus disorder prediction | 84 | 109 | - | - | |
Mtr1g2575 | 469 | CDD | RRM1_hnRNPA_hnRNPD_like | 8 | 78 | - | - | |
Mtr1g2575 | 469 | CDD | RRM2_DAZAP1 | 110 | 189 | IPR034131 | GO:0003723 | |
Mtr1g2575 | 469 | Gene3D | - | 107 | 230 | IPR012677 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Mtr1g2575 | Mtr-Chr1 | 36618972 | 36622090 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Mtr1g2575 | 8 | 200 | Eukaryotic Initiation Factors Gene Family | AT2G23350 | 23.383 | 4.22e-07 | 50.4 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mtr1g2575 | K14411 | - | gmx:100811267 | 584.719 |