Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2566 ATGGCAAACGGGTCATCCCTTGATCGGTCTGAAGCTGAAACATTTACTGAATTTCATAGAAATGGCGGTTGTCTTGTCGAGGGTCGTGTTGATAGTGCTGATCATGACAATGACAAGGCTAAACAAAAATCTTTGTTTTGTCAATTTTTTTCGGCTTACCTAAAGGAGAATTGTAGTAGAGGCAATGTGAGGCCTGTGCCGGTGATGCTCGGTGAGGGTCAATTGCTTGATTTATATCAATTGTTCTCCCTTGTGAAGGAAAAAGGTGGGTATGATGCGGTATCAAGAAAAGGGTTGTGGAAGTCTGTGATAGTTGAACTGGGTTTGGACCTTCGTGTTCTACCTTCGGTGAAATTATTTTTTGACAAATATCTGAATGATTTCGAAGGTTGGCTCAGGAAATCTCTCGAAGAGAATAGTTTAAAAAATGGGAATGATGGGTATTTGAACTCATTGCCAATAGATCTAGAAAAAGAGTTTCAAAACCTTTTTTGCTCAAATCTAAAGGACAAAGATGATGATTTTGTCCCGTTAGAATCGAGTAACATCATAAAGCACATTGATTTGGTTAACCACAAGAGTGATGGTTATTTATTGGACACTAAAAATCAAAATAACAAATGTGACGGTGTCCAAAATGTTAACAGTGATGGTAATGGCGGCTACGATGAAAAATTGGGCACTGGTGTTAAGGATGATATAACCGCCTCTTGTGCGGAAACTGAGAAGGAATTTAATTCTCGCAAACGTAAACTAGAATCGCCTATAGCTCAACCATTAACAGAACCATCAAAGGGGAAGGAGTATAAAGAAGGCCAGGACATTTTTGTTCAGAGGCTAAGGGCACAAGATGTTCTGTCGGTCAGAAAGCATGCAGAACCAAACCGTGGATCATCATCCAAGAAGGAGAAGATGAATCCTGCCAAGTATGAGGATCTGAGACGTAGTAAAAGGCTGTCTGTCGCTCTTAAGTTGCATGGTATGGAATCAGAAAAAAGTCCTATGGAGAAAACAACTGGCAAACCAGACGTCATGATCAAGAAGAAAAAATCAACTTCCAAAGCAGCTGTGACAAAAAAGAAAATATCAACTGCCAAAGCAGCTGTGACTGAAGAGAAAAAATACGACCCATTTAGTGATGATTCTCGTGATGTTTCTGTTGGTCCTCTTTTCCAAGTGGAAGTCCCACAATGGACTGGTATAGTTTATGGGAGTGACTCTAAATCGTTAGGCACACAAGTATGGCCTGTTAAAGATGATTCAAGACCTACTACAGAAACAGATCTTATTGGTAGAGGAAGACGAGGAAAGTGTAGCTGCAATGTTCAAGGTTCAGTTGACTGTGTAAGATCACATGTTGCTTCAAACAGGATGAAGCTGAAGTTTGAGTTGGGTTCTGCATTTTACCATTGGGGATTTGATAAAATGGGCGAGGAAGTTTCACTTCAATGGACAGGTGATGAAGAAAAGAGATTTAAGGATATAATGAGTCTAAAAATCCCCTCCCAAAACAAGTCTTTTTGGAACAATCCATCCAGTTACTTTCAAAAGAGGACAAGAAAAGACATGGTGAGTTATTACTTCAATGTATATCTTATTCAACTAAGAAGTTATCAGAATCGAGTGACTTCGGAGACTGTTGACAGTGATGATGACGAAATCGAATTTGAATCTTTTGGTGATGGTTTCGGGAGGAAAGCTATCCAGCGTCCATCAATTGAATTCAAGGAGTGTTCAGAGAACAAGTAA 1749 0.3962 MANGSSLDRSEAETFTEFHRNGGCLVEGRVDSADHDNDKAKQKSLFCQFFSAYLKENCSRGNVRPVPVMLGEGQLLDLYQLFSLVKEKGGYDAVSRKGLWKSVIVELGLDLRVLPSVKLFFDKYLNDFEGWLRKSLEENSLKNGNDGYLNSLPIDLEKEFQNLFCSNLKDKDDDFVPLESSNIIKHIDLVNHKSDGYLLDTKNQNNKCDGVQNVNSDGNGGYDEKLGTGVKDDITASCAETEKEFNSRKRKLESPIAQPLTEPSKGKEYKEGQDIFVQRLRAQDVLSVRKHAEPNRGSSSKKEKMNPAKYEDLRRSKRLSVALKLHGMESEKSPMEKTTGKPDVMIKKKKSTSKAAVTKKKISTAKAAVTEEKKYDPFSDDSRDVSVGPLFQVEVPQWTGIVYGSDSKSLGTQVWPVKDDSRPTTETDLIGRGRRGKCSCNVQGSVDCVRSHVASNRMKLKFELGSAFYHWGFDKMGEEVSLQWTGDEEKRFKDIMSLKIPSQNKSFWNNPSSYFQKRTRKDMVSYYFNVYLIQLRSYQNRVTSETVDSDDDEIEFESFGDGFGRKAIQRPSIEFKECSENK* 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2566 582 Pfam ARID/BRIGHT DNA binding domain 50 129 IPR001606 GO:0003677
Mtr1g2566 582 SUPERFAMILY ARID-like 48 134 IPR036431 GO:0003677
Mtr1g2566 582 MobiDBLite consensus disorder prediction 328 350 - -
Mtr1g2566 582 Gene3D - 28 144 IPR036431 GO:0003677
Mtr1g2566 582 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 1 582 - -
Mtr1g2566 582 CDD ARID 48 129 - -
Mtr1g2566 582 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 1 582 - -
Mtr1g2566 582 SMART bright_3 41 134 IPR001606 GO:0003677
Mtr1g2566 582 Coils Coil 580 582 - -
Mtr1g2566 582 ProSiteProfiles ARID domain profile. 40 133 IPR001606 GO:0003677
Mtr1g2566 582 MobiDBLite consensus disorder prediction 241 270 - -
Mtr1g2566 582 MobiDBLite consensus disorder prediction 287 310 - -
Mtr1g2566 582 SMART ARID_2 37 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2566 Mtr-Chr1 36553821 36562850 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Mtr1g2566 ARID 8.3e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2566 - - mtr:MTR_1g073530 1133.24