Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2562 ATGGCAAACGGGTCATCCCTTGATCGGCCTGAAGCTGAAACTTTTACTGAATTTCATAAAAATGGCGGTTGTCTTGTCGAGGGTCGTGTTGATAGTTCTGATCATGACAATGACAAGGCTAAACAAAAATCTTTGTTTTTTCAACTTTTTTCGGCTTACCTAAAGGAGAATTGTAGTAGAGGCACTGTGAGGCCTGTGCCAGTCATGCTCGGTGAGGGTCAATTGCTTGATTTATATCAATTATTCGCCCTTGTGAAGGAAAAAGGCGGGTATGATGCGGTATCGAGAAAAGGGTTGTGGAATTCTGTGATAGTTGAACTGGGTTTGGACCTTCGTGTTCTAGCTTCGGTGAAATTAGTTTTTGACAAATATCTGAATGATTTCGAAGGTTGGCTCAGGAAATCTTTCGAAGAGAAGAGTTTAAAAAATGGGAATGATGGGTATTTGAACTCATTGCCAATAGATCTAGAAAAAGAGTTTCAAAACCTTTTTTGCTCAAATCTAAAGGACAAAGATGATGATTTTGTCCCGTTAGAATCGAGTAACATCATAAAGCACATTGATTTGGTTAACCAGAAGAGTGATGGTTATTTATTAGACACTAAAAATCAAAATAACAAATGCGATGGTCTCCAAAATGTTAACAGTGATGGTCATGGCGGCGACGATGAAAAATTGGGCACTGGTGTTAAGGATGATATAACCGCCTCTTGTGCGGAAACTGAGAAGGAATTTAATTCTCGCAAACGTAATCGGGAATCGCCTGCAGCTCAACCATTAACAGAACCATCAAAGGGGAAGGAGTATAAAGGATACCAGGACATTTTTGTTCAGATGCTGAGGGCACGAGATGTTCTGTCGGTCAGAAAGCATGCAGAACCAAACCGTGGATCATCATCCAAGATACATCCTGCCAAGTATGAGGATCCTGTTTCTCTTGGTCAGCAAGGTAGGGTGAATCTGAGACGTAGTAAAAGGCTCTCTATGTCTCTTAAGTTGCACGCTATGGAATCAGAAAAAAGTCCTATGGAGAAAACAACTGGCAAACCAGATATCGTGATCAACAAGAAAAAACCAACTACCAAAGCAGCTGTGAGAAAAAAGAAAAAATCAACTGCCAATGCAGCTGGGACTGAAGAGAAAAAATATGACCCATTTAGTGATGATTCTCGTGATAAGGTTGTTTCTGTTGGTCCTCTTTTCCAAGTGGAAGTCCCGCAATGGACTGGTGTAGTTTATGGGAGTGACTCTAAATCGTTAGGCACACAAGTATGGCCTGTTAAAGATGATTCAAGACCTACTACAGAAACAGATCTTGTTGGTAGAGGAAGACGAGGAAAGTGTAGCTGCAATGTTCAAGGTTCAGTTGACTGTGTAAGATTGCATATTGCTGCAAACAGGATGAAGCTGAAGTTTGAATTGGGTTCTGCATTTTACCATTGGGGATTTGATAAAATGGGTGAGGAAGTTTCACTTCAATGGACAGGTGATGAGGAAAAGAGATTTAAGGATATAATGAGTCTAAAAATCCCCTCCCAAAACAAGTCTTTTTGGAACAATCCGTCCAGTTACTTTCAAAAGAGGACAAGAAAAGACATGGTGAGATATTACTTCAATGTATATCTTATTCAACTAAGAAGCTATCAGAATCGAGTGACTTCGGAGACTGTTTACAGTGATGATGACGAAATCGAATTTGAATCTTTTGGTGATGGTTTCGGGAGGAAAGCTATCAAGCGTCCATCAATTGAATTCAAGGAGTGTTCAGAGAATAAGTAA 1779 0.4008 MANGSSLDRPEAETFTEFHKNGGCLVEGRVDSSDHDNDKAKQKSLFFQLFSAYLKENCSRGTVRPVPVMLGEGQLLDLYQLFALVKEKGGYDAVSRKGLWNSVIVELGLDLRVLASVKLVFDKYLNDFEGWLRKSFEEKSLKNGNDGYLNSLPIDLEKEFQNLFCSNLKDKDDDFVPLESSNIIKHIDLVNQKSDGYLLDTKNQNNKCDGLQNVNSDGHGGDDEKLGTGVKDDITASCAETEKEFNSRKRNRESPAAQPLTEPSKGKEYKGYQDIFVQMLRARDVLSVRKHAEPNRGSSSKIHPAKYEDPVSLGQQGRVNLRRSKRLSMSLKLHAMESEKSPMEKTTGKPDIVINKKKPTTKAAVRKKKKSTANAAGTEEKKYDPFSDDSRDKVVSVGPLFQVEVPQWTGVVYGSDSKSLGTQVWPVKDDSRPTTETDLVGRGRRGKCSCNVQGSVDCVRLHIAANRMKLKFELGSAFYHWGFDKMGEEVSLQWTGDEEKRFKDIMSLKIPSQNKSFWNNPSSYFQKRTRKDMVRYYFNVYLIQLRSYQNRVTSETVYSDDDEIEFESFGDGFGRKAIKRPSIEFKECSENK* 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2562 592 SUPERFAMILY ARID-like 38 134 IPR036431 GO:0003677
Mtr1g2562 592 MobiDBLite consensus disorder prediction 372 389 - -
Mtr1g2562 592 CDD ARID 46 129 - -
Mtr1g2562 592 ProSiteProfiles ARID domain profile. 40 133 IPR001606 GO:0003677
Mtr1g2562 592 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 15 592 - -
Mtr1g2562 592 MobiDBLite consensus disorder prediction 424 444 - -
Mtr1g2562 592 MobiDBLite consensus disorder prediction 358 389 - -
Mtr1g2562 592 MobiDBLite consensus disorder prediction 218 251 - -
Mtr1g2562 592 Pfam ARID/BRIGHT DNA binding domain 50 129 IPR001606 GO:0003677
Mtr1g2562 592 SMART bright_3 41 134 IPR001606 GO:0003677
Mtr1g2562 592 Gene3D - 28 144 IPR036431 GO:0003677
Mtr1g2562 592 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 15 592 - -
Mtr1g2562 592 SMART ARID_2 37 129 - -
Mtr1g2562 592 MobiDBLite consensus disorder prediction 208 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2562 Mtr-Chr1 36491397 36497357 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Mtr1g2562 ARID 1e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2562 - - mtr:MTR_1g073530 1062.37