Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2560 ATGTTGGAGGACCTTTTTGATCAGCCATTGCCTTCAAATTTAAAGGCAGATCAACACCAACAAGATCACCAACACCAACAACAGCAGCAACATCAACAACAACTTTCCATTGATGAAATTTCGAGCCCTCTTAGCGCTCGAATTTTTGAACTTTGTAACACTGAATTATTCCCAGAAGCTTTGCAGAATTCTGAAGTTACATCAAGCTCAAATTGTTGCTATGAAGAGAATTCCTCATATGCAACAAATATATTAGATGTAGAAAACAAGTTCAATAATAGCAATAGCAATAACACAGTGGTCACAACTCCAACTAGCACAAACAACAATATCAACAACAATAATTCCAACAATAGCAATAATCTATCAGTTATCTTTGATTCACAAGAAGAAATTGACAATGACATTTCTGCCTCAATAGATTTCTCACTATCACCATCTTTCAATGTTCCTTCATTCCTTCCAGTCACATCATCACAGCAAGTAGAGCAATTTGATTTCTCTTCTGTACAGCCTCATCATGTTCAACTTACCGCATGTTCATCCGTTGATGGGTTTTCGCAGTATCATAATCCAAATGATTCAGTTGCACCTCTTATGGGAGCTCCCTTATCATTACCATCTGTTTTTGAAGAGGATTGCATTACTTCTGTACCTTCTTATGTTCCTTTGAACCCTTCTTCTCCTTCTTGCAATTATCTTGGTCCTGCCGGTATGGCGGCATACATGCCTAATGGTTCTCTTACCACTGCTTTGTCTACTGATAGTTCTGGTTTGTTTGGTGGAAATATGGTTTTTGGTTCTGAAATTCAGACACAAGAACTTGATTATCAAGGAGATAATGGTAGAATTTATTGTCCTGATCCTATTCAGAGGGTGTTTAACCCTCCTGACCTTCAGGCACTTAATCCTGAGAATCAACAACTAGTAGCTGGTGCTGGTAGTTCTGCCACTCTGACACCAGAAATCTCAAACTTGGAAGACTCCACTTTCAAGGTTGGAAAACTTTCTGTTGAACAAAGGAAAGAAAAGATTCACAGATACATGAAGAAAAGAAATGAAAGAAACTTCAGCAAGAAAATTAAGTATGCATGCCGCAAAACTCTGGCTGATAGCAGACCTCGAGTTAGAGGAAGATTTGCAAAGAATGATGATTTTGGAGATACAAATAGAACTGCTAGTGGCAATCATGAAGAAGAAGATGAAGAAGAGGTAGTTGTGAAAGAGGAAGATGATATGGTTGATTCCTCAGATATATTTGCTCATATCAGTGGAGTGAACTCCTTCAAATGCAATTATTCCATTCAATCATGGATTTGA 1320 0.3788 MLEDLFDQPLPSNLKADQHQQDHQHQQQQQHQQQLSIDEISSPLSARIFELCNTELFPEALQNSEVTSSSNCCYEENSSYATNILDVENKFNNSNSNNTVVTTPTSTNNNINNNNSNNSNNLSVIFDSQEEIDNDISASIDFSLSPSFNVPSFLPVTSSQQVEQFDFSSVQPHHVQLTACSSVDGFSQYHNPNDSVAPLMGAPLSLPSVFEEDCITSVPSYVPLNPSSPSCNYLGPAGMAAYMPNGSLTTALSTDSSGLFGGNMVFGSEIQTQELDYQGDNGRIYCPDPIQRVFNPPDLQALNPENQQLVAGAGSSATLTPEISNLEDSTFKVGKLSVEQRKEKIHRYMKKRNERNFSKKIKYACRKTLADSRPRVRGRFAKNDDFGDTNRTASGNHEEEDEEEVVVKEEDDMVDSSDIFAHISGVNSFKCNYSIQSWI* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2560 439 MobiDBLite consensus disorder prediction 1 35 - -
Mtr1g2560 439 MobiDBLite consensus disorder prediction 379 398 - -
Mtr1g2560 439 Pfam CCT motif 341 383 IPR010402 GO:0005515
Mtr1g2560 439 ProSiteProfiles CCT domain profile. 341 383 IPR010402 GO:0005515
Mtr1g2560 439 PANTHER CCT MOTIF FAMILY PROTEIN 37 439 - -
Mtr1g2560 439 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 37 439 - -
Mtr1g2560 439 MobiDBLite consensus disorder prediction 379 407 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2560 Mtr-Chr1 36461893 36466138 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2560 321 390 C2C2-CO-like Transcription Factor Family AT5G24930 40.000 2.05e-11 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Mtr1g2560 CCT 5.9e-19 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2560 - - aprc:113871720 595.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g2560 1 36461893 36466138 Mtr1g2560 1 36461893 36466138 ECH