Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2550 ATGTATTCAGGAATGATGGAAGGAAACACTGGATGGAGTGTAATAGAAGAAGATAGATGGAGGAAAGGACCTTGGACTTCTGAGGAAGACAAATTGCTCATTGAGTATGTCAAGCTGCATGGTGAAGGCAGATGGAACTCTGTCTCTAGGCTTGCAGGACTGAGAAGAAATGGGAAAAGTTGTAGATTGAGATGGGTGAACTACCTAAGACCAGACCTCAAGAAGGGTCAGATAACACAACAAGAAGAAAGCATAATCCTAGAGCTACATGCTAGGTGGGGAAACAGGTGGTCAACAATTGCGAGAAGCTTGCCGGGAAGAACAGACAATGAGATAAAGAACTATTGGAGGACTCATTTCAAGAAAAAGAACAAAAACCCCACTGATGCTGCTGAAAAGGCGAAAAACCGTTATTTCAAGAGGCAGCAACAACAACAATTGAAGAAACAACAGCAACAAGTTCAGATGCAGCAACAACAACTGCAATACAACATGGACATGAAAGGGATCATAGACTTGTTGCTTGAGGAAAATGACTACTGTACTAGTGTACCTTCTACTTCTCAAGAGACACAAGAAATGGTTTCCATGTATGCAGATACGCAAGAACAACAGGGTTGCTTTTACTCTATGCTCAATGATAATAATGGTAATGTCTATGCACATGAGTCTTCAAATGAAGAAATTTTGTGGGATGGACTTTGGAACTTGGATGATGCTCTTGGAAATTCAATGCAGCTAATGCTACAAGCAAAGCCAGCCAATGTGTGTTAA 774 0.4109 MYSGMMEGNTGWSVIEEDRWRKGPWTSEEDKLLIEYVKLHGEGRWNSVSRLAGLRRNGKSCRLRWVNYLRPDLKKGQITQQEESIILELHARWGNRWSTIARSLPGRTDNEIKNYWRTHFKKKNKNPTDAAEKAKNRYFKRQQQQQLKKQQQQVQMQQQQLQYNMDMKGIIDLLLEENDYCTSVPSTSQETQEMVSMYADTQEQQGCFYSMLNDNNGNVYAHESSNEEILWDGLWNLDDALGNSMQLMLQAKPANVC* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2550 257 ProSiteProfiles Myb-like domain profile. 17 69 IPR001005 -
Mtr1g2550 257 Pfam Myb-like DNA-binding domain 22 69 IPR001005 -
Mtr1g2550 257 Pfam Myb-like DNA-binding domain 75 119 IPR001005 -
Mtr1g2550 257 Coils Coil 257 257 - -
Mtr1g2550 257 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 21 73 IPR017930 -
Mtr1g2550 257 Gene3D - 22 74 - -
Mtr1g2550 257 CDD SANT 24 69 IPR001005 -
Mtr1g2550 257 Gene3D - 79 123 - -
Mtr1g2550 257 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 74 124 IPR017930 -
Mtr1g2550 257 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 1 251 IPR044676 GO:0003700|GO:0006355|GO:0043565
Mtr1g2550 257 PANTHER MYB TRANSCRIPTION FACTOR 1 251 - -
Mtr1g2550 257 CDD SANT 79 120 IPR001005 -
Mtr1g2550 257 Coils Coil 140 160 - -
Mtr1g2550 257 SMART sant 74 122 IPR001005 -
Mtr1g2550 257 SMART sant 21 71 IPR001005 -
Mtr1g2550 257 ProSiteProfiles Myb-like domain profile. 70 120 IPR001005 -
Mtr1g2550 257 SUPERFAMILY Homeodomain-like 19 116 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2550 Mtr-Chr1 36356590 36357940 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2550 17 238 MYB Transcription Factor Family AT3G24310 59.130 2.33e-80 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mtr1g2550 Myb_DNA-binding 8.5e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2550 K09422 - gmx:100782089 346.665
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g2550 1 36356590 36357940 Mtr1g2550 1 36356590 36357940 ECH