Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2545 ATGGAGCAGGAAGAGCACGAAGTCTACGGTGCTGACATTCCCGATGAAGAGGTTGACATGGATGCCGACATAGATGCTGAACATCAAGAAGGCGATGAAGAACTCGCATCCAATCACACCACCAAGGAATTGGAGGATATGAAGAAGAGGCTGAAAGAGATCGAGGAAGAAGCTAGCGCCCTTCGCGAAATGCAAGCTAAGGTTGAGAAAGAGATGGGCGCTGTTCAAGATCCTGCTGGGTCTTCTGTGTCTCAAGCTGAAAAGGAGGAAGTGGATGCTAGATCTATCTATGTCGGTAATGTTGACTATGCATGCACACCTGAAGAAGTCCAACAGCATTTTCAGTCCTGTGGTACTGTGAACAGAGTCACAATATTGACAGACAAATTTGGTCAACCGAAAGGATTTGCTTATGTAGAATTTGTTGAAGCTGATGCTGTTCAGAATGCTCTCATTTTAAATGAAACTGAATTGCATGGCCGACAGCTGAAGGTGTCTGCAAAACGTACTAATGTTCCTGGATTGAAGCAGTACGGAAGAAGACCTGCTGGTTTCCGCGGTAGGAGGCCTTTCATGCCTGCACCATTCTTTCCACCATATGCTTACGGAAGGGTTCCGAGATATAGAAGACCCACCCGATACCGGCCATACTAG 654 0.4664 MEQEEHEVYGADIPDEEVDMDADIDAEHQEGDEELASNHTTKELEDMKKRLKEIEEEASALREMQAKVEKEMGAVQDPAGSSVSQAEKEEVDARSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEADAVQNALILNETELHGRQLKVSAKRTNVPGLKQYGRRPAGFRGRRPFMPAPFFPPYAYGRVPRYRRPTRYRPY* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2545 217 Gene3D - 12 174 IPR012677 -
Mtr1g2545 217 PANTHER POLYADENYLATE-BINDING PROTEIN 1-LIKE 3 216 - -
Mtr1g2545 217 MobiDBLite consensus disorder prediction 1 30 - -
Mtr1g2545 217 CDD RRM_II_PABPs 95 166 - -
Mtr1g2545 217 Coils Coil 37 71 - -
Mtr1g2545 217 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 96 164 IPR000504 GO:0003723
Mtr1g2545 217 MobiDBLite consensus disorder prediction 1 48 - -
Mtr1g2545 217 SMART rrm1_1 95 166 IPR000504 GO:0003723
Mtr1g2545 217 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 94 170 IPR000504 GO:0003723
Mtr1g2545 217 SUPERFAMILY RNA-binding domain, RBD 84 190 IPR035979 GO:0003676
Mtr1g2545 217 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 3 216 - -
Mtr1g2545 217 MobiDBLite consensus disorder prediction 31 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2545 Mtr-Chr1 36324274 36328960 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2545 95 166 Eukaryotic Initiation Factors Gene Family AT2G36660 35.616 1.71e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2545 K14396 - gmx:100527139 334.724