Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2537 ATGGCAGATGCACCGAACCAATGCGAAGAAAGCCACGAGAGTGGTGGTGAACAGAGTCCACGTGGCTCTTCTTCTGCTTCACGTGAACAAGATCGTTTTTTGCCTATAGCTAACATTAGCAGAATCATGAAAAAAGCTTTACCTTCAAATGGGAAAATTGCTAAGGATGCTAAAGATACGATGCAAGAATGTGTTTCTGAATTCATCAGCTTTATTACCAGCGAGGCAAGTGAGAAATGCCAGAAAGAGAAGAGAAAGACCATTAATGGAGATGATTTGTTATGGGCTATGGCTACTTTAGGATTTGAAGATTATATAGAACCACTTAAGGTGTACCTAGCAAGGTACAGAGAGTTAGAGGGTGACAGTAAAGGATCTGTTAGAAACAGTGATGGATCTGGTAGACGAGATCAAGTTGGCGGTCCTCCAGGTCAAAATGCTCAGTTTGTTCATCAGGGTTCTTTGAGCTATATTGATTCCCAGGTGCATCCACAACATCTGGTTATGCCTTCAATGCAAAATCATGAATAG 531 0.4162 MADAPNQCEESHESGGEQSPRGSSSASREQDRFLPIANISRIMKKALPSNGKIAKDAKDTMQECVSEFISFITSEASEKCQKEKRKTINGDDLLWAMATLGFEDYIEPLKVYLARYRELEGDSKGSVRNSDGSGRRDQVGGPPGQNAQFVHQGSLSYIDSQVHPQHLVMPSMQNHE* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2537 176 ProSitePatterns NF-YB/HAP3 subunit signature. 64 80 IPR003956 GO:0005634|GO:0006355|GO:0043565
Mtr1g2537 176 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 33 97 IPR003958 -
Mtr1g2537 176 MobiDBLite consensus disorder prediction 122 153 - -
Mtr1g2537 176 MobiDBLite consensus disorder prediction 1 31 - -
Mtr1g2537 176 Gene3D Histone, subunit A 20 150 IPR009072 GO:0046982
Mtr1g2537 176 MobiDBLite consensus disorder prediction 11 31 - -
Mtr1g2537 176 PRINTS CCAAT-binding transcription factor subunit A signature 61 79 - -
Mtr1g2537 176 PRINTS CCAAT-binding transcription factor subunit A signature 80 98 - -
Mtr1g2537 176 PRINTS CCAAT-binding transcription factor subunit A signature 99 117 - -
Mtr1g2537 176 SUPERFAMILY Histone-fold 30 136 IPR009072 GO:0046982
Mtr1g2537 176 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2-RELATED 1 156 - -
Mtr1g2537 176 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 156 IPR027113 GO:0001228|GO:0006355|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2537 Mtr-Chr1 36224539 36228752 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2537 2 170 CCAAT-HAP3 Transcription Factor Family AT2G37060 67.456 4.12e-77 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Mtr1g2537 CBFD_NFYB_HMF 4.5e-29 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2537 K08065 - gmx:100815883 288.5