Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2522 ATGGAAGGAGAAAGTAACAACAAAGAGAACAGTTCTAAGCTAGCATCATATGAAGCTGAAGGAACCAGTAACCATGATGTTTCTGAGGAACATCACATTCAAAACCAATACTTTGGAAGAAGTGGGATAGAGTGGAATTTCTTACCAAAACTACCTCAAAATAACTATGTTGAATATCTCTCTGAATCCTCATGTTATCTTCCAAATACTGCCACAACAGCTGAGTATAATATGATTGGGAATAGCCATTATCACACTCTTGGTAGTAGCAGCAGCAGTTTCAATGATCCTGGAAAAGCTGATTTTGGTTTTAAGCTGATTGATTCTTCAAGTCATGATTTTGGTGTTAGGAAGCGTGCAGGGCTTTGGAGAAGTGATGAAGGAGAGGAAGAAGCTCATAAATTTGAAACTGGAAGTAGTCAAAATCTCCACTATGCTGAGGGTCATGCAACATGGACACCTGATTCTGTTGGAGATAAGCAATATGGTTCACAATTTGATCATATGGGAGTAGTTGCTGCACCTTCTTTACTTCCAAATCCAAAATCAGGAGGCAGCTCCACAAAACAGAAAAGTGAGAAAACACGTTACAGTGACCGTCAACGCAGGCAACGTATTGCTGATAACCTCAAAGCTTTACATGAATTGCTGCCGACTCCACATGTGGGTAGTCAAGCTTACATATTGGATGATATCATTGACTATGTTAAATACTTGCAGATTCAAGTGAAGGAACTAAGTGGAAGTAAATTGCAAGCTGATTCAAATTCTATACCACTAGTTTTCCATGAGGGTTATGGGCATTATATAAAGGAACAGGTGTTGAATGAGCCTCTTGAAGAGATAATGGGGAATCTACTTGAAGTAAATTCAGCAGCAACATGTCAGCTACTTGAAAACAAAGGTATGTGA 912 0.3904 MEGESNNKENSSKLASYEAEGTSNHDVSEEHHIQNQYFGRSGIEWNFLPKLPQNNYVEYLSESSCYLPNTATTAEYNMIGNSHYHTLGSSSSSFNDPGKADFGFKLIDSSSHDFGVRKRAGLWRSDEGEEEAHKFETGSSQNLHYAEGHATWTPDSVGDKQYGSQFDHMGVVAAPSLLPNPKSGGSSTKQKSEKTRYSDRQRRQRIADNLKALHELLPTPHVGSQAYILDDIIDYVKYLQIQVKELSGSKLQADSNSIPLVFHEGYGHYIKEQVLNEPLEEIMGNLLEVNSAATCQLLENKGM* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2522 303 MobiDBLite consensus disorder prediction 174 202 - -
Mtr1g2522 303 PANTHER TRANSCRIPTION FACTOR BHLH66-LIKE ISOFORM X1 15 302 - -
Mtr1g2522 303 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 188 253 IPR036638 GO:0046983
Mtr1g2522 303 Pfam Helix-loop-helix DNA-binding domain 198 240 IPR011598 GO:0046983
Mtr1g2522 303 Gene3D - 187 258 IPR036638 GO:0046983
Mtr1g2522 303 SMART finulus 196 245 IPR011598 GO:0046983
Mtr1g2522 303 MobiDBLite consensus disorder prediction 1 27 - -
Mtr1g2522 303 MobiDBLite consensus disorder prediction 8 22 - -
Mtr1g2522 303 CDD bHLH_AtbHLH_like 198 247 IPR045239 -
Mtr1g2522 303 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 190 239 IPR011598 GO:0046983
Mtr1g2522 303 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 15 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2522 Mtr-Chr1 36091892 36094892 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2522 170 251 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G24260 45.455 1.63e-14 70.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr1g2522 HLH 4.2e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2522 - - mtr:MTR_1g072530 613.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g2522 1 36091892 36094892 Mtr1g2522 1 36091892 36094892 ECH