Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2513 ATGGCTGCTCCATCTCCATTAGGCAGTAAGCTTCAAAACATGTTGCAGGCTGCGGTGCAATCTGTTCAGTGGACTTATAGCCTCTTCTGGCAACTTTGCCCACAACAACTGATTCTAGTATGGGGTGATGGATATTACAATGGATCAATTAAGACTCGAAAGACAGTGCAACCAATGGAGGTTAGTGCTGAGGAAGCATCTCTACAAAGAAGCCAGCAACTAAGAGAACTCTATGAATCATTGTCTGCCGGAGAGACAAATCCACCAACTCGTCGTCCATGTGCTTCCTTGTCACCTGAGGACCTAACAGAATCTGAATGGTTCTATTTGATGTGTGTCTCTTTCTCTTTTCCTCCTGGTGTAGGGTTGCCTGGAAGGGCATACACAAAGAGACAGCATATATGGCTCACGGGTGCAAATGAAGTGGATAGCAAAATATTTTCAAGAGCTATTCTAGCTAAGAGTGCTAATATACAGACTGTGGTATGTATTCCTGTATTGGATGGCGTCGTTGAGTTTGGCACAACGGATAAGGTTCAAGAAGACCTTAATTTCATCAAACATGTGAAGAGCTTCTTCTTAGATGGTCACTCTTTGCCGCCAAAGCCAGCACTCTCAGAACACTCAACCTCTAACCCAACTTCCTCAACCGATCACATTCCTACCATCATGTACACCATGGCAGACCCACCCTCTACAAATCCCAATCAAGACGACATGGATGAAGACGAGGAAGAAGAAGAAGAAGAAGATGAAGAAGACGACGAAGTTGAATCCGAGTCTGAAGACGAAACAGGAGGTCGTATCCGACGTGCAACCTCAATGACGGCTATTGTAGAGCCAAGTGAGTTGATGCAAATTGAAATGCCCGATGATATTCGGATCGGGTCGCCAAACGACGGGTCAAATCATTTAGATTCAGATTTTCATTTATTAGTTGTGAGTAATCAAGGAAACCCGTTAGGACACGTGGACTCGTACAAAACCGATTTAACACAAAGGTGGGGCCCAATTGAAGAACCGGTGGGTAATTTGCTACAAGTTCAACTACCATCCTCAGTACTTCATCATCAACTAGAAGACTTAACACAAGAAGACACACACTACTCTCAAACTGTTTCAACCATTCTTCAAAACCAATCAACACAATGGACTATCGATTCTTCACCTTCCATCAACTACATCACTTCCTCTAACCAATCCTCTTTCACCAACTGGACCAACCACCATAACTTCCACCCTCTACCACCACCGGAAACCACCACCACCACCTCCCAATGCCTCCTCAAATACATCCTCTTCACAGTCCCATACCTCCACACCAAAAACCATGACGAAACCTCCCCTCAAACTCATGATGCAGGCGTTGACCCCTCCTCCAAGTTACGTGGCAAGGGAACACCGCAAGACGAGCTGAGCGCCAACCATGTCCTCGCGGAGCGACGAAGAAGAGAGAAACTCAATGAAAGGTTCATTATTTTAAGATCATTGGTTCCATTCGTGACAAAAATGGACAAGGCTTCTATATTAGGTGACACTATTGAGTACTTGAAACAGCTAAGAAGAAAGATACAAGATCTTGAAACACGTAACCGTCAGATAGAGACTGAACAACAAAGTAGGAGTGGTGTAACGGTTTTGGTGGGTCCAACAGATAAGAAAAAGGTGAGGATTGTGGAAGAGTGTGGAGCCACGAGAGCGAAAGCAGTTGAGACGGAGGTTGTTTCGTCGGTTCAGGTTTCGATTATTGAGAGTGATGCTTTGTTGGAGATTGAGTGTTTGCATAGAGAAGGATTGTTGCTTGACGTTATGGTAATGTTGAGGGAGTTGAGGATTGAGGTTATTGGAGTTCAATCTTCGCTTAATAATGGTGTTTTTGTTGCGGAGTTGAGGGCTAAGGTGAAGGAAAATGGTGGAAATGGGAAGAAAGTTAGTATTGTGGAAGTTAAGAGAGCACTTAACCAAATTATACCTCACAACATTTAG 1986 0.4416 MAAPSPLGSKLQNMLQAAVQSVQWTYSLFWQLCPQQLILVWGDGYYNGSIKTRKTVQPMEVSAEEASLQRSQQLRELYESLSAGETNPPTRRPCASLSPEDLTESEWFYLMCVSFSFPPGVGLPGRAYTKRQHIWLTGANEVDSKIFSRAILAKSANIQTVVCIPVLDGVVEFGTTDKVQEDLNFIKHVKSFFLDGHSLPPKPALSEHSTSNPTSSTDHIPTIMYTMADPPSTNPNQDDMDEDEEEEEEEDEEDDEVESESEDETGGRIRRATSMTAIVEPSELMQIEMPDDIRIGSPNDGSNHLDSDFHLLVVSNQGNPLGHVDSYKTDLTQRWGPIEEPVGNLLQVQLPSSVLHHQLEDLTQEDTHYSQTVSTILQNQSTQWTIDSSPSINYITSSNQSSFTNWTNHHNFHPLPPPETTTTTSQCLLKYILFTVPYLHTKNHDETSPQTHDAGVDPSSKLRGKGTPQDELSANHVLAERRRREKLNERFIILRSLVPFVTKMDKASILGDTIEYLKQLRRKIQDLETRNRQIETEQQSRSGVTVLVGPTDKKKVRIVEECGATRAKAVETEVVSSVQVSIIESDALLEIECLHREGLLLDVMVMLRELRIEVIGVQSSLNNGVFVAELRAKVKENGGNGKKVSIVEVKRALNQIIPHNI* 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2513 661 PANTHER TRANSCRIPTION FACTOR TT8 10 659 - -
Mtr1g2513 661 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 473 540 IPR036638 GO:0046983
Mtr1g2513 661 SMART finulus 477 526 IPR011598 GO:0046983
Mtr1g2513 661 Gene3D - 472 544 IPR036638 GO:0046983
Mtr1g2513 661 MobiDBLite consensus disorder prediction 442 476 - -
Mtr1g2513 661 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 11 193 IPR025610 -
Mtr1g2513 661 PANTHER TRANSCRIPTION FACTOR TT8 10 659 - -
Mtr1g2513 661 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 471 520 IPR011598 GO:0046983
Mtr1g2513 661 Coils Coil 240 260 - -
Mtr1g2513 661 MobiDBLite consensus disorder prediction 203 273 - -
Mtr1g2513 661 Coils Coil 510 537 - -
Mtr1g2513 661 MobiDBLite consensus disorder prediction 204 235 - -
Mtr1g2513 661 MobiDBLite consensus disorder prediction 236 262 - -
Mtr1g2513 661 Pfam Helix-loop-helix DNA-binding domain 474 521 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2513 Mtr-Chr1 36006449 36014780 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2513 356 660 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09820 40.000 3.26e-55 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr1g2513 bHLH-MYC_N 1.1e-53 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2513 - - cam:101506726 888.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g2513 1 36006449 36014780 Mtr1g2513 1 36006449 36014780 ECH
Mtr7g3245 7 49533490 49535575 Mtr1g2513 1 36006449 36014780 PCT