Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2502 ATGAGGGAAGGGTTGAGATCTCAAACTCCGGCGAGGAAGGGTTCTGTTGGTGGTGGTGGAGAAGTTGTTAGGAAGAAAAGGGTACGTGTGAAGAATGAGGGTTTGGTTTTGGGTTTAGAGGGTTTAGTGGAACCTACCGAGTTGAATGAGAAGGGTGAAGTTGAAGGTTTAGTTTTGGGTGATGAGGGTTCTGGTGGTGATGGGGGAGTTGTTCAAAAGAAAAGGGCACGTCTGCAGAATGAGGGTATGGTTACGGGCGATGAGGTTTTATTGGGACCTACCGAATCGATTGAGAAGAAGGGCAATGTTGAATGTGCTGACGATGTTGAGTGTGCTGTCAAAGTTGAGGCTTTAGTGAAGCCTACCTCAACGATTGAGAAGAAGGGCGGGGTTGAATGTGCAGGTGATTTTGAGTGTGCCGGTGAAGTTGATGCTTTAGCGAAGCCTACCTCATCGATTGAGAAGGGCGGGGTTGAGTGTGCAGGTGATATTGAGTGTGCTGGTGAAGTCGAGGCTTTTACAAAGCCTACCTCATCAATTGAGAAGAAGGGTGGGGTTGAATGTGCAGAAGATATTGAGTGTTCTGGTGAAGTTGAGGCTTTAGTGAAAAATACTTCATCGAATGATAAGAAAGGTGCAGTTGAATGTGCAGGTGATGTTGAGTGTACTGGTGAAGTTGAGGCTCTAGTGAAACCTACCTCATCGACTGAGAAGAAAGTTGCAGTTGAATGTGAAGGCAATGTTGAGTGTACTGGTGAAGTTGAGGCTCTAGTGAAACCTACCTCATCGACTGAGAAGAAAGGTGCAGTTGAATGTGCAGGCAATGTTGACTGTGCTGGTGAAGTTGAGTGTGCTGTGAGAAGAGGACGTGACTTGGATTTAAATGTGAGTTTGTGTATGGATGATGACATAGCTGAGAATGGGGAGAGTAGCCCTCAGAGTTCTTTAAAAGACAGGGATATCAATGTCGAAGCTAAAGCTGATAAGAAGGAGGATGAAGGGGTGAGTGGGGTTCGATTGTTGCGGTCAAGGTCAAAGAACGGGGGTGAGAGAATATCTTATAATGAAGAGAATTATGGTGTCTTTTCTGGGAGTGATGGAAAACATGGTGTGTTGGAGAGGATCAAAGTCAAGATTGAAGAAGCTGATGAGGTTTTAACTGATGGTAACAAGAATGAAAAGGTTAAGGTGAAAATAGGGGGAAAGGTAAAGAAGAAATTGAAACGGAAGCGTGGGAGGCCTCGGAAAACAGAGATAAAAGAGAAAGATGAATTAGTTGATCAGCCACCGCGTAAGCTTGGGAGGCCTCATAAAACAGAGTTAAAAGAGGATGATCGGTTAGTTGATCAACCACAACGTAAGCTTGGAAGGCCGCGCAAAACAGAGTTAAAAGACCATGATCAGTCACCGCGAAAGCTTCCGAGGACTCGCAAATCAGAGTTAAAAGGGGATGGTCAGTTCGTTGATCAGTCACCGCGTAAGCTTGGGAGGCCTCGCAAGACAGAGTTAAACGAGGATGATCAGTCACCACGTAAGCGTGGAAGACCCTTCAAGGCCGACCAACAAAAACATCTCATGACCGTGGCACATAATAGTAAAGGAAAGATGAGCCGTGAAAATGGTAAAAAAGTTTTAACTGTAACAGATAGTGCAAGTACAAATGAAGTTGATGATACATGCTCAGGGAGATCTTCTGGCAAAAAGTTAAAAGAGAAGAGATTTTCTCCTGTAAGGAAAAATAATCCACGAAAGGTTTTGAAAACTGAGAATGATGAGATGGTCTCGCCATTGGTATCAACTACTGTGAAAGCAGCTGTTGCTAAAGAAGGGCCAAGGCGTAAAGAACAGCAGTTGGTGAGGGATAAAATAAGGGAATGTCTCTTTGCTGCGGGATGGACAGTAGACCATAGACCTAGAAACGGCAGAAATTATGTTGATTCAGTATATGTTAGTCTGGATGGAACTACACATTGGTCTGTAACCTTGGCGTACAAAAGGCTTAAACAGCATTATGAAGCTGGGGATGGTGAAGGTAAGTTGTACAAACCTGGATTTATATTTACACCCATACTGCAGGAAGATTTCAATAGACTAACCAGAGTAGTTACCAAGTCCAAAAAAGGAAGTAATGTTAAATGTGAGCCCTTTGAAGAAAAAGGTGGAAAGAAAGTTGGAGTCAAACGAAAAGAGAAAAAAATAAAACCTGATTCTGGTGCAGGCAAGGGTAAGTCAGTAAAGGGGAAAATGAAAAGGAAACTTAAAAGGAAACGACCGCTTCCTGAGGAGGGCAACACAAATGTTACATCACCTAACAGGGATCGTAAGCGGCACAAAACACAGAACAAGACGCGGAGCACTCTGTTGGTTCGTGATGCTACAGAGGAGGTAGATTCAGAAATTAATGGATATGTGCCATACAGTGGAAAACGAACCATACTTTCCTGGATGATTGATTTGGGCACAATCCTCCAAAATGGGAAGGTCCATTATACACAAGATAGGTTGGAAAATGCTTCACTGGAAGGTAAGATCACAGGAGATGGCATTCACTGTGGCTGCTGTAATGAAATCGTAACAATTTCAGACTTTGGAGCTCATGCAGGAAGCAAACAATCTGATCCTCTGAAAAATATATATACGGAGGAAGAAACTTCACTCCTACAATGCCTGTTAGATTCATGGAATAAACAAGATGAATCTGAACTTAAAAGTTTTCATTTCTTTGATGTTGCGGGTGAAGATCCAAATGATGATACATGTGGTGTCTGCGGGGATGGTGGAGACCTGATCTGCTGTGATGGTTGCCCATCAACATTCCATAAAAGCTGCTTAGATATAAAATTCCCGTCTGGTGACTGGCACTGTGCTTACTGTTGTTGCAAATTTTGTCGGTTGGTTGGCGGAAGTTCAAACCAAAGTGTTGTCAATGATGAGTTTACTATGCCTGCATTGCTCACATGCCATTTATGTGAGGAAAAATTTCACATATCCTGTGTTGAGGCAAATGGTGGCAAGACCGATGATTCCAAGGATGCATTATTTTGTGGAAACAAATGTCAAGAGTTATCGGAGAGACTTGAAATGCTTCTTGGGGTTAAACATGAAATTGAAGATGGATTTTCTTGGTCTTTTATTCGCCGGTCAGATGTTGGCTGTGATCTTTCTCTGACAAATCCTCAGTTGGTAGAATGTAATTCTAAGCTGGCTGTTGCATTATCAATAATGAATGAGTGCTTCATGCCATATATTGATCATAGAAGTGGGACCAATCTGCTCCGCAGTATTCTATATAATTGTGGGTCAAATTTCAAACGACTGGACTATAGTGGGTTTATTACTGTAATTCTAGAGAGAGGTGATGAGATCATCTGTGTTGCATCTATCAGGGTCCATGGGAACCGACTTGCAGAGATGCCATATATTGGGACCCGCTATATGTATAGGCGACAAGGAATGTGCCGTCGGCTTCTAAATGCCATTGAATCGGCACTCAGTTCTTTAGATGTTGAGTTATTGGTCATACCAGCAATATCAGAACTCAGAGAAACCTGGACCTCCGTTTTTGGGTTTGAGCCACTTAAACAAACAAGCAAGCAAATAACAAATAACATGAATCTGTTGGTGTTTCCTCATGTAGATTTGTTACAGAAGAAGATATCAAAGCATGCAATTGCTAATGAAAATTTGATTCATAATGAAGTTTCCAATCATCAGAAGAATCTTACTGCATACAAGGTAGCATGTCAGGATGGGGAAGACTCATCTGGATCTGATTGTTGCCCGAAAATTGAAAAAAATATATCTGTTGAATCTGGTTGTCTGCAACTTGAGAACTCGTTGAATAATGCACCTGACATTACTAGCAACAACATACAGAATATTGAATCTCAAAAAGATGTCACATATCATGCTGCATGTCAGATTGTTAATGAAAAATTGGTTGTGGACAACAAGATTTCCGACAGTTGTGAACTGAGACTTACGACTGACTGTGCTCAACCGGGCTGTATAGGATCAAAAGTATATGCTGAATCTGACGATGGTTGTGGCTCTCATTCTAGACCAGATGGTGATAGTGCTTCTGGCGAAGCAGGTCTCACAAGCAACATCTTGAGGCACGTTGAATCACAGAATACTACCAAAGATGTGCCTGTTAATTGTGAAAACAACTCTAGTGTTGTTAGTGTGCTAAATGCTGACGAAGAACTACATTATTCCAAAACAATTGATCTCCAGACAAAAAAAAATCCTGGAGATCGCTCATCTATTCTAGTATCTTCAGGTATTTGTGACAAAATTGCACATGGTGTCAATGGAACGAATAAAGCATCCAGGGAAGCTGATACTGATTTTCTTCCTGCTGATATTGAACTAATTCTTGATGATAAGCCTGGTTCTCATTCTAGACCCAATGGTCATAGTGCCCATGGCGAAGCAGGTGTTACAACCAACGTTTTGATGCACCTTGAATCCCAGAGTATTACTAAAGATTTTCCTGTTAATTGTGAGAACAATTCTAGTGTTGTTGGTGCTCCAAATGCTGATGAATCAGAACGATGTTACTCCAAAACAATTGATCTCCAGACAAACAAAAATCCTGGAGATCGTGAGAAAATTGCAGATGTTGTAAATGAGAGGAATAAAGTGTCCAATGCAGCTGATGCTGATTTTCTTCCAATTGATCTTGAATTAGTTCCCAATAATAAGCCTGGGATAAAAGAGTCTTCAGAGCTATCAGAGGTTAATTTGCAGGTTGATCAAACTGAATCGAGTAACGCTAACACTGCTTCGGGTGCGGCTCTGCACTGTACATCTACCGGCAGTACTTCATGTGGTAGTGCTGAAGGGATAGTTCTGTCAAACCAGGCAGTTGAGTAG 4878 0.4196 MREGLRSQTPARKGSVGGGGEVVRKKRVRVKNEGLVLGLEGLVEPTELNEKGEVEGLVLGDEGSGGDGGVVQKKRARLQNEGMVTGDEVLLGPTESIEKKGNVECADDVECAVKVEALVKPTSTIEKKGGVECAGDFECAGEVDALAKPTSSIEKGGVECAGDIECAGEVEAFTKPTSSIEKKGGVECAEDIECSGEVEALVKNTSSNDKKGAVECAGDVECTGEVEALVKPTSSTEKKVAVECEGNVECTGEVEALVKPTSSTEKKGAVECAGNVDCAGEVECAVRRGRDLDLNVSLCMDDDIAENGESSPQSSLKDRDINVEAKADKKEDEGVSGVRLLRSRSKNGGERISYNEENYGVFSGSDGKHGVLERIKVKIEEADEVLTDGNKNEKVKVKIGGKVKKKLKRKRGRPRKTEIKEKDELVDQPPRKLGRPHKTELKEDDRLVDQPQRKLGRPRKTELKDHDQSPRKLPRTRKSELKGDGQFVDQSPRKLGRPRKTELNEDDQSPRKRGRPFKADQQKHLMTVAHNSKGKMSRENGKKVLTVTDSASTNEVDDTCSGRSSGKKLKEKRFSPVRKNNPRKVLKTENDEMVSPLVSTTVKAAVAKEGPRRKEQQLVRDKIRECLFAAGWTVDHRPRNGRNYVDSVYVSLDGTTHWSVTLAYKRLKQHYEAGDGEGKLYKPGFIFTPILQEDFNRLTRVVTKSKKGSNVKCEPFEEKGGKKVGVKRKEKKIKPDSGAGKGKSVKGKMKRKLKRKRPLPEEGNTNVTSPNRDRKRHKTQNKTRSTLLVRDATEEVDSEINGYVPYSGKRTILSWMIDLGTILQNGKVHYTQDRLENASLEGKITGDGIHCGCCNEIVTISDFGAHAGSKQSDPLKNIYTEEETSLLQCLLDSWNKQDESELKSFHFFDVAGEDPNDDTCGVCGDGGDLICCDGCPSTFHKSCLDIKFPSGDWHCAYCCCKFCRLVGGSSNQSVVNDEFTMPALLTCHLCEEKFHISCVEANGGKTDDSKDALFCGNKCQELSERLEMLLGVKHEIEDGFSWSFIRRSDVGCDLSLTNPQLVECNSKLAVALSIMNECFMPYIDHRSGTNLLRSILYNCGSNFKRLDYSGFITVILERGDEIICVASIRVHGNRLAEMPYIGTRYMYRRQGMCRRLLNAIESALSSLDVELLVIPAISELRETWTSVFGFEPLKQTSKQITNNMNLLVFPHVDLLQKKISKHAIANENLIHNEVSNHQKNLTAYKVACQDGEDSSGSDCCPKIEKNISVESGCLQLENSLNNAPDITSNNIQNIESQKDVTYHAACQIVNEKLVVDNKISDSCELRLTTDCAQPGCIGSKVYAESDDGCGSHSRPDGDSASGEAGLTSNILRHVESQNTTKDVPVNCENNSSVVSVLNADEELHYSKTIDLQTKKNPGDRSSILVSSGICDKIAHGVNGTNKASREADTDFLPADIELILDDKPGSHSRPNGHSAHGEAGVTTNVLMHLESQSITKDFPVNCENNSSVVGAPNADESERCYSKTIDLQTNKNPGDREKIADVVNERNKVSNAADADFLPIDLELVPNNKPGIKESSELSEVNLQVDQTESSNANTASGAALHCTSTGSTSCGSAEGIVLSNQAVE* 1626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2502 1625 PANTHER PHD FINGER PROTEIN 12 23 1503 IPR042163 GO:0003714|GO:0045892
Mtr1g2502 1625 MobiDBLite consensus disorder prediction 403 538 - -
Mtr1g2502 1625 MobiDBLite consensus disorder prediction 1 20 - -
Mtr1g2502 1625 CDD PHD1_AIRE 920 958 - -
Mtr1g2502 1625 SUPERFAMILY FYVE/PHD zinc finger 912 964 IPR011011 -
Mtr1g2502 1625 SMART PHD_3 919 959 IPR001965 -
Mtr1g2502 1625 SMART PHD_3 960 1020 IPR001965 -
Mtr1g2502 1625 MobiDBLite consensus disorder prediction 553 575 - -
Mtr1g2502 1625 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 23 1503 - -
Mtr1g2502 1625 MobiDBLite consensus disorder prediction 305 335 - -
Mtr1g2502 1625 ProSiteProfiles Zinc finger PHD-type profile. 917 961 IPR019787 -
Mtr1g2502 1625 Pfam Tify domain binding domain 842 891 IPR032308 -
Mtr1g2502 1625 SMART AT_hook_2 492 504 IPR017956 GO:0003677
Mtr1g2502 1625 SMART AT_hook_2 510 522 IPR017956 GO:0003677
Mtr1g2502 1625 SMART AT_hook_2 430 442 IPR017956 GO:0003677
Mtr1g2502 1625 SMART AT_hook_2 452 464 IPR017956 GO:0003677
Mtr1g2502 1625 SMART AT_hook_2 408 420 IPR017956 GO:0003677
Mtr1g2502 1625 MobiDBLite consensus disorder prediction 561 575 - -
Mtr1g2502 1625 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 910 981 IPR013083 -
Mtr1g2502 1625 MobiDBLite consensus disorder prediction 706 784 - -
Mtr1g2502 1625 CDD NAT_SF 1114 1174 - -
Mtr1g2502 1625 MobiDBLite consensus disorder prediction 319 335 - -
Mtr1g2502 1625 Pfam AT hook motif 492 501 IPR017956 GO:0003677
Mtr1g2502 1625 Pfam AT hook motif 408 417 IPR017956 GO:0003677
Mtr1g2502 1625 Pfam AT hook motif 453 462 IPR017956 GO:0003677
Mtr1g2502 1625 MobiDBLite consensus disorder prediction 493 520 - -
Mtr1g2502 1625 MobiDBLite consensus disorder prediction 710 743 - -
Mtr1g2502 1625 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 1059 1212 IPR000182 GO:0016407
Mtr1g2502 1625 PRINTS AT-hook-like domain signature 408 418 IPR017956 GO:0003677
Mtr1g2502 1625 PRINTS AT-hook-like domain signature 428 439 IPR017956 GO:0003677
Mtr1g2502 1625 PRINTS AT-hook-like domain signature 508 518 IPR017956 GO:0003677
Mtr1g2502 1625 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 1106 1176 IPR016181 -
Mtr1g2502 1625 MobiDBLite consensus disorder prediction 416 484 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2502 Mtr-Chr1 35897005 35907496 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2502 615 1219 PHD Transcription Factor Family AT4G14920 45.774 2.33e-178 565
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2502 - - mtr:MTR_1g072130 3078.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g2502 1 35897005 35907496 Mtr1g2502 1 35897005 35907496 ECH