Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2487 ATGGAGCAGTATGAAGTACTAGAACAAATTGGTAAGGGTTCTTTTGCTTCTGCTTTGCTTGTAAGACACAAGCATGAAAACAAAAGGTATGTGCTGAAGAAGATCCGTCTTGCCCGGCAGTCAGACAGAATCCGTAGATCTGCTCACCAGGAGATGGAACTTATATCTAAAGTTCGTAATCCGTTCATTGTAGAGTATAAAGATTCCTGGGTAGAAAAGGGTTGCTTTGTATGTATAGTCATTGGCTATTGTGAAGGAGGAGATATGGCTGAAGCTATTAAAAAGGCGAACTGTGTTCATTTTTCTGAAGAGAGGCTTTGCAAGTGGCTTGTTCAACTCTTGATGGCACTTGATTACTTGCACGCAAATCATATTCTTCACCGTGATGTCAAGTGTTCGAATATATTCTTGACAAAAGATCAGGATATACGTCTAGGCGACTTTGGTCTTGCTAAAATGTTGACAAGTGATGATCTTGCTTCCTCGATTGTTGGGACTCCAAGTTACATGTGCCCAGAGCTTCTTGCTGATATACCCTACGGCTCTAAGTCAGATATCTGGTCTTTGGGATGCTGTGTATATGAAATGGCTGCTCACAAACCAGCTTTTAAAGCTCTCGATATGCAAGCACTAATCAACAAAATAAACAAGTCTTTAGTGGCCCCATTACCAACAATGTATTCTGGTACTTTTCGAAGCATGGTGAAAAGCATGCTGCGGAAAAACCCCGAGCTTAGGCCAAGTGCTGCAGATCTACTAAATCATCCTCATCTTCAACCTTATATACTTAAAGTTCATCTGAAACTAAATAACCCCAGAAGAAGTACTTTCCCTTTCCAATGGACTGACTCAAACCATGCTAGGAGAAGTCGATTTTTAGAACGAGAATCTGTTTCCACTATCTCAGGCAGAGCTAAACGATTGTCATTCAGTAACGATAGGGCCTTGAATCCTAGTATTTCTGGAACTGAAGTAGGTTCTCTGTGTTCTACTCAAAGAGCACAAGGATTCTCTACTTGTTCAAAACATTATGAACTATCCATAGGTTGTGTCCGCGAAGAACACAATGCTAACAATTTGAAAGACACCAAGTTCTCAATTGTTGATCAGATGCAAAGACTGGGTGCATGTAAGGAGTCGGCCATCCCCCGGCGACAGACAACACCATCAAAGATAGCCTATACTAGTTCTAAGCGTGACTCACTTCCATCATCTTCTACTCCAGCTAGTAAATTTACTCCACCATCTCGCAGAGCTTCCCTTCCACTTCCTACAAGATCCAAGGCCACAACTACGCCTTACAGATCCAATGTTGGTCCTCTTCGAAGCGTGGACTCTCCTGATATTTCTGTTAACGCGCCACGAATTGACAAGATTGCTGAGTTCTCTTTGGCCCCGGGGGAGGATCACCCTCTCTTCCCTGTGCGCGGAACATCATCAACATCAGCTCAGTGCTCTTCTAGTTCCCCGAGGAGCGCTGCTGCCGACCACTCAATCACAAAGGACAAGTGTACAATTCAGGTTATGGACAAAGCCAGTGTCCCTACAAGTGGTCCTCTACAACATGTGGCAACTGCTGTTTCAAGCCATTCCTCAGCCGATTCTCATCAGCGCAAGTTTGACACCTCGTCTTACCAGCAACGAGCTGAGGCATTGGAAGGGTTGCTCGAGTTCAGTGCTCGACTTCTACAACAACAGAGGTTTGAAGAGCTTGAGGTGTTGTTGAAACCGTTTGGGCCTGAGAAGGTTTCTCCTAGGGAAACAGCTATTTGGTTGACCAAGAGCTTCAAAGAAACTGTGGTCTAA 1806 0.4408 MEQYEVLEQIGKGSFASALLVRHKHENKRYVLKKIRLARQSDRIRRSAHQEMELISKVRNPFIVEYKDSWVEKGCFVCIVIGYCEGGDMAEAIKKANCVHFSEERLCKWLVQLLMALDYLHANHILHRDVKCSNIFLTKDQDIRLGDFGLAKMLTSDDLASSIVGTPSYMCPELLADIPYGSKSDIWSLGCCVYEMAAHKPAFKALDMQALINKINKSLVAPLPTMYSGTFRSMVKSMLRKNPELRPSAADLLNHPHLQPYILKVHLKLNNPRRSTFPFQWTDSNHARRSRFLERESVSTISGRAKRLSFSNDRALNPSISGTEVGSLCSTQRAQGFSTCSKHYELSIGCVREEHNANNLKDTKFSIVDQMQRLGACKESAIPRRQTTPSKIAYTSSKRDSLPSSSTPASKFTPPSRRASLPLPTRSKATTTPYRSNVGPLRSVDSPDISVNAPRIDKIAEFSLAPGEDHPLFPVRGTSSTSAQCSSSSPRSAAADHSITKDKCTIQVMDKASVPTSGPLQHVATAVSSHSSADSHQRKFDTSSYQQRAEALEGLLEFSARLLQQQRFEELEVLLKPFGPEKVSPRETAIWLTKSFKETVV* 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2487 601 Gene3D Transferase(Phosphotransferase) domain 1 84 273 - -
Mtr1g2487 601 CDD STKc_Nek 3 258 - -
Mtr1g2487 601 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Mtr1g2487 601 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 590 - -
Mtr1g2487 601 MobiDBLite consensus disorder prediction 423 439 - -
Mtr1g2487 601 Pfam Protein kinase domain 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g2487 601 ProSiteProfiles Protein kinase domain profile. 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g2487 601 SUPERFAMILY Protein kinase-like (PK-like) 1 312 IPR011009 -
Mtr1g2487 601 MobiDBLite consensus disorder prediction 477 495 - -
Mtr1g2487 601 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Mtr1g2487 601 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Mtr1g2487 601 SMART serkin_6 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g2487 601 PANTHER SERINE/THREONINE-KINASE NEK4 1 590 - -
Mtr1g2487 601 MobiDBLite consensus disorder prediction 383 414 - -
Mtr1g2487 601 MobiDBLite consensus disorder prediction 378 449 - -
Mtr1g2487 601 MobiDBLite consensus disorder prediction 477 498 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2487 Mtr-Chr1 35633159 35637867 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2487 10 259 MAP Kinase Kinase Kinase AT1G53570 30.980 1.02e-36 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Mtr1g2487 Pkinase 2.7e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2487 K08857 - gmx:100810347 972.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g2487 1 35633159 35637867 Mtr1g2487 1 35633159 35637867 ECH
Mtr7g2835 7 45096161 45102686 Mtr1g2487 1 35633159 35637867 PCT