Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2480 ATGAATTATATGTACTCGGTGAAAGAAGAACACTTAGAACCAACGATTCCACCACCCCAACCAAATGAAGGACTTAATGAAATTAGGCCACAACCATTCCTCACAAAAACATTTGATGTAGTTGATGATCAAAGTACCAACCATATAGTTTCATGGAACAGGAGTGGCACAAGTTTTGTGGTTTGGGATACACATGCCTTCTCCAATCTTCTCCTTCCCAGATACTTCAAACACAATAATTTCTCAAGCTTTGTCAGACAACTAAACACTTATGGATTTAGAAAAATTGATTCAGATAGATGGGAATTTGCAAATGAAGGATTCCTAAGAGGGCAAAGACATCTATTGAGGAACATAAGGAGAAAGAAGGGACCTTCTCAGCCTATTGAAGTTGGTTGTGTTGGACTAGATGCAGAAATTGATCGTTTAAGGCAAGAGAAACACATGTTGATGACGGAGCTTGTGAGTCTTAGAAAGCAGCAATATAATACTACACTGTACCTTCTAGAGATGGAGCATAGGTTAGAAGGGATAAAAATCAATCAGAAGAAAATGATGTCTTTCTTAGCTAGAGCTATGAAAAACCCTGTCTTCATTCACCAACTACTCCAACAAAAAGAGAAGAAAAAGGAGCTTGAAGAAGCCGTGACCGTGACAAAAAAGAGAAGGCTTGTTGAACAAGGAACTAGACTAGGTATTGGACAATCAAGCAGTGTTAAAGTTGAGCCGTTAGAATTATGTGATTATGAATTTGGGGTGTCGGAGTTGGAAATGTTAGCTCTGGAAATGCAGGTTTTTGGAAGGGGGGAAATGAATAAGGAGGAAGTACATGAACCTGAGGCACTAGAATCACAAGAGAAGATGGAAACAGTGCTTGATGATGAAGGGTTCTGGGAAGATCTAATGTTTAGTATGAAATTTGAGGGTAGATTTGACATTCCAACTTCTGAAGATAACAATGAGAATGAAGATGATTCAAGTGAACCACTGAGTCAAGAATTTAGGGTTAACTCTTTTCATTCAGTTCACTAG 1032 0.3847 MNYMYSVKEEHLEPTIPPPQPNEGLNEIRPQPFLTKTFDVVDDQSTNHIVSWNRSGTSFVVWDTHAFSNLLLPRYFKHNNFSSFVRQLNTYGFRKIDSDRWEFANEGFLRGQRHLLRNIRRKKGPSQPIEVGCVGLDAEIDRLRQEKHMLMTELVSLRKQQYNTTLYLLEMEHRLEGIKINQKKMMSFLARAMKNPVFIHQLLQQKEKKKELEEAVTVTKKRRLVEQGTRLGIGQSSSVKVEPLELCDYEFGVSELEMLALEMQVFGRGEMNKEEVHEPEALESQEKMETVLDDEGFWEDLMFSMKFEGRFDIPTSEDNNENEDDSSEPLSQEFRVNSFHSVH* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2480 343 Pfam HSF-type DNA-binding 33 122 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mtr1g2480 343 Coils Coil 202 222 - -
Mtr1g2480 343 SUPERFAMILY "Winged helix" DNA-binding domain 30 122 IPR036390 -
Mtr1g2480 343 Gene3D - 26 123 IPR036388 -
Mtr1g2480 343 SMART hsfneu3 29 122 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mtr1g2480 343 PRINTS Heat shock factor (HSF) domain signature 33 56 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mtr1g2480 343 PRINTS Heat shock factor (HSF) domain signature 71 83 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mtr1g2480 343 PRINTS Heat shock factor (HSF) domain signature 84 96 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mtr1g2480 343 Coils Coil 140 160 - -
Mtr1g2480 343 ProSitePatterns HSF-type DNA-binding domain signature. 72 96 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mtr1g2480 343 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-7A 18 323 - -
Mtr1g2480 343 MobiDBLite consensus disorder prediction 312 343 - -
Mtr1g2480 343 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 18 323 IPR027725 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2480 Mtr-Chr1 35580833 35583049 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2480 15 302 HSF AT3G22830 49.699 2.39e-98 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Mtr1g2480 HSF_DNA-bind 4.4e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2480 K09419 - gmx:100811945 387.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr7g2843 7 45186434 45191696 Mtr1g2480 1 35580833 35583049 PCT