Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2479 ATGTTCCCTGCACTAATGTCCAATTCCACTTCTTTCTCAGAAGAAACAAATGTCTCTTCTGCTAGATTAAACCACTTAGTTTCAACCTTAAATTCCTCACAACAGCCTCAAAAGACCAAGAAAAAAAGAAGCCTCCCTGGTAACCCAGATCCTGATGCTGAAGTGATAGCTTTATCACCAAAGACACTATTAACAACAAATAGATTTGTGTGTGAGATCTGCAACAAGGGTTTTCAAAGAGATCAAAACCTACAGCTACATAGGAGAGGACATAACCTACCATGGAAGTTGAAGCAAAGGAACAACAAAGATGTTATTAAAAAGAGAGCTTATGTTTGTCCAGAGCCTTCATGTGTTCATCATAACCCTTCAAGGGCTCTTGGAGATCTTACAGGAATTAAGAAACATTATAGTAGAAAACATGGTGAGAAAAAATGGAAATGTGATAAGTGCTCAAAGATCTATGCTGTTCATTCTGATTGGAAAGCTCACTCTAAAACCTGTGGTACTCGAGAATATAAATGTGATTGTGGTACCCTTTTTTCCAGGAAGGATAGCTTCATAACTCATAGAGCATTTTGTGATGCATTGGCTGAAGAAAGTGCAAGAATGTCTGCAAACCAATTAGCCATCACCACCACAAACACAAACCCATTAGTCCAATCTCTTTTCCTCTTCCCAAATCAACAACAAAGTTTCCAAAACCCACAAAGCCACATCACCTGGGACCCACCTCAACAAAACCCTAACCCTAGCAACCTTAATAATACTCTCCACCACAACATCAAGCCTGAATCTCCAAATTTTCACACCAACCTCTCTTCTCCTCCTCCTCTCCCATTTCTTCATCACACAAACCCTAAGAGCATAATGACATCATCACCCTTCCACGTCAGCACACAACAACCTTCTTCCACTGCTGCCATGTCACCACACCTCTCAGCAACTGCACTTCTCCAAAAAGCAGCAACCGTCGGTGCGGCCGCCATCACAGGAAGCCAACCAACAATGAGTCACCATCAAACCTCTCAGCTCAGCATTGGCCAGTTTGGATCAGTGACTCAGCTAGACTCAGTTGATCACTACATTAACAACATGAGAGGCTGTCTCACCGGAAAGAACGACGATGGTCTCACTAGGGACTTTCTTGGCCTTACCAACGGTGGAGGAAATGGTGGTGACTCCTTGGATGTAAAGGATATGCTAACATTCACGGGGGGTGTAGAATACCACCAACACCAACCTCATCAAAACATGATGATGCTCAAGTCACAGTCACAACAAGCAGGTTTTGGTTTTCTTGGGACAACAACTGTTCCTGAGTCGTGGGGGAACTGTTAG 1341 0.4303 MFPALMSNSTSFSEETNVSSARLNHLVSTLNSSQQPQKTKKKRSLPGNPDPDAEVIALSPKTLLTTNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNNKDVIKKRAYVCPEPSCVHHNPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKIYAVHSDWKAHSKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARMSANQLAITTTNTNPLVQSLFLFPNQQQSFQNPQSHITWDPPQQNPNPSNLNNTLHHNIKPESPNFHTNLSSPPPLPFLHHTNPKSIMTSSPFHVSTQQPSSTAAMSPHLSATALLQKAATVGAAAITGSQPTMSHHQTSQLSIGQFGSVTQLDSVDHYINNMRGCLTGKNDDGLTRDFLGLTNGGGNGGDSLDVKDMLTFTGGVEYHQHQPHQNMMMLKSQSQQAGFGFLGTTTVPESWGNC* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2479 446 Gene3D Classic Zinc Finger 48 118 - -
Mtr1g2479 446 ProSiteProfiles Zinc finger C2H2 type domain profile. 69 91 IPR013087 -
Mtr1g2479 446 MobiDBLite consensus disorder prediction 29 52 - -
Mtr1g2479 446 PANTHER PROTEIN INDETERMINATE-DOMAIN 12 7 421 - -
Mtr1g2479 446 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 7 421 - -
Mtr1g2479 446 SUPERFAMILY beta-beta-alpha zinc fingers 68 166 IPR036236 -
Mtr1g2479 446 Gene3D Classic Zinc Finger 123 204 - -
Mtr1g2479 446 SMART c2h2final6 111 141 IPR013087 -
Mtr1g2479 446 SMART c2h2final6 69 91 IPR013087 -
Mtr1g2479 446 SMART c2h2final6 146 166 IPR013087 -
Mtr1g2479 446 ProSitePatterns Zinc finger C2H2 type domain signature. 71 91 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2479 Mtr-Chr1 35558766 35562833 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2479 23 410 IDZ Gene Family AT4G02670 50.500 1.97e-119 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mtr1g2479 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2479 K25870 - gmx:100812496 545.428