Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2462 ATGGCGAATCATCCTTCCGATACACCCGCCGACGATTTCCTTGAACAAATTCTCGGTCTCCCGAATTTCACCTCCGCCGACGGAACCGACGCTTCTCCGATGATGCTGCAACTTAACTCCGGCGACGCGGCCTCTCACCTTGGCGCCGGAGGGGGGTTTCATGCACCGGTTTATCATTTGGGTTTGAGCTTGGACCAGGGTAAAGGAGGAGGGTTTTTGAAGCCTGATGAAGCTTCCGGGAGTGGGAAGCGTTTCCGGGAGGATCTTGTTGATACAAGACCTAAGAATACTTTTCATGGACAACCCATGCCTACTACAGTTCCTGCTGCTCCACAACCACCAGCAATGCGTCCTAGAGTGCGGGCAAGAAGAGGACAGGCTACAGATCCCCATAGCATCGCTGAAAGGTTGCGCAGAGAAAGAATAGCTGAAAGAATCAGGGCTTTGCAAGAACTTGTTCCTAGTGTCAACAAGACTGATCGAGCTGCCATGCTAGATGAAATTGTGGATTATGTCAAATTCTTAAGGCTTCAAGTGAAGGTTTTGAGCATGAGTAGATTGGGTGGAGCCGGTGCAGTGGCTCCACTGGTAACTGACATCCCATTATCGTCAGTCGAGGAAGAAGGAAGTGATAGTGGGAGAAACCAACCAGCTTGGGAGAAGTGGTCTAATGATGGCACAGAAAAGCAAGTAGCTAAGCTCATGGAAGAAAATGTTGGGGCTGCGATGCAGTTTCTTCAATCAAAGGCTCTTTGCATAATGCCCATCTCACTGGCATCTGCAATATACCAATCGCAACCATCAGACAACTCCAGTATAGTTAAGCCTGAAACTATTCCTCCTCCATAG 849 0.4923 MANHPSDTPADDFLEQILGLPNFTSADGTDASPMMLQLNSGDAASHLGAGGGFHAPVYHLGLSLDQGKGGGFLKPDEASGSGKRFREDLVDTRPKNTFHGQPMPTTVPAAPQPPAMRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVTDIPLSSVEEEGSDSGRNQPAWEKWSNDGTEKQVAKLMEENVGAAMQFLQSKALCIMPISLASAIYQSQPSDNSSIVKPETIPPP* 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2462 282 SMART finulus 132 181 IPR011598 GO:0046983
Mtr1g2462 282 MobiDBLite consensus disorder prediction 93 116 - -
Mtr1g2462 282 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 126 175 IPR011598 GO:0046983
Mtr1g2462 282 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 124 185 IPR036638 GO:0046983
Mtr1g2462 282 Gene3D - 121 183 IPR036638 GO:0046983
Mtr1g2462 282 MobiDBLite consensus disorder prediction 208 223 - -
Mtr1g2462 282 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 7 271 - -
Mtr1g2462 282 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 7 271 - -
Mtr1g2462 282 MobiDBLite consensus disorder prediction 205 225 - -
Mtr1g2462 282 Pfam Helix-loop-helix DNA-binding domain 131 175 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2462 Mtr-Chr1 35297367 35301586 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2462 53 281 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 78.298 1.31e-115 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr1g2462 HLH 1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2462 - - gmx:100793177 435.261
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g2462 1 35297367 35301586 Mtr1g2872 1 39881967 39889081 ECH
Mtr1g2462 1 35297367 35301586 Mtr1g2462 1 35297367 35301586 ECH