Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2460 ATGGAAAATTCTTTGGGGAACCATCAAACAGAAATGAATCTTAAGGCTACAGAATTAAGGTTGGGATTACCAGGTAGTGATGAAGTGGAAAAACTTCCATGCAATTTTTCTGTTCTTAGAAACAACAAGAGATCTTCTCCAGAAGAAGCAAGTGATGTAGATTCCATTAGCAAGAGCAAATTGAATAGTTCTAATGGTTCTTCTCATACCACAAATGATGACCAAGATAATGCTCCACCTTCAAAGGCACAAGTAGTTGGATGGCCACCAATAAGATCTTATAGGAAGAATAGTTTGCAACAAAAGAAGGGTGAAGAGGTTGGGATGTACTTGAAAGTGAGTATGGCTGGTGCACCTTATTTAAGGAAGATAGATCTCAAAGTTTACAAGAGTTACTCAGAACTTCTCAAGGTTTTGGAAAATATGTTCAAGTGTACAATTGGTGAATATTCAGAAAGAGAAGGTTACAATGGATCTGAATTTGTTCCAACTTATGAAGACAAAGATGGTGATTGGATGCTTGTTGGAGATGTTCCTTGGGAAATGTTCATGTCTTCTTGCAAGAGGTTAAGAATTATGAAAGGATCAGAAGCAAAGGGATTGGGTTGTTTTTGA 615 0.3707 MENSLGNHQTEMNLKATELRLGLPGSDEVEKLPCNFSVLRNNKRSSPEEASDVDSISKSKLNSSNGSSHTTNDDQDNAPPSKAQVVGWPPIRSYRKNSLQQKKGEEVGMYLKVSMAGAPYLRKIDLKVYKSYSELLKVLENMFKCTIGEYSEREGYNGSEFVPTYEDKDGDWMLVGDVPWEMFMSSCKRLRIMKGSEAKGLGCF* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2460 204 Pfam AUX/IAA family 17 202 IPR033389 -
Mtr1g2460 204 SUPERFAMILY CAD & PB1 domains 105 194 - -
Mtr1g2460 204 MobiDBLite consensus disorder prediction 38 87 - -
Mtr1g2460 204 ProSiteProfiles PB1 domain profile. 108 195 IPR000270 GO:0005515
Mtr1g2460 204 PANTHER AUXIN-INDUCED PROTEIN 2 202 - -
Mtr1g2460 204 MobiDBLite consensus disorder prediction 56 79 - -
Mtr1g2460 204 Gene3D - 102 204 - -
Mtr1g2460 204 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 2 202 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2460 Mtr-Chr1 35286994 35288520 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2460 100 201 B3 DNA Binding Superfamily AT2G46530 36.275 5.13e-12 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Mtr1g2460 AUX_IAA 1e-56 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2460 K14484 - gmx:100780752 303.523
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g2460 1 35286994 35288520 Mtr1g2675 1 37796894 37798255 ECH
Mtr1g2460 1 35286994 35288520 Mtr1g2460 1 35286994 35288520 ECH