Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2458 ATGGAAGTTGTTGCAGGGATGAAAAAGGAGGAAAAGATGGTGTTTGATGAAACTGAACTGAGGTTAGGACTTGGATTGCCAGGGAAAACAACAGAAGTAGTAAGGAAGAGAGGTTTTTCTGAAACTGAGAGTGAAAGTGAAACAAACACTGTGGATTTGAAGCTTAATCTTTCTACTAAGGAAGGAGCAACAGATCCACAATTTAAGCCAAAGGAGAAGGCTCTTCTGCTCTCTGATTCTGGTGCCAAGCCTCCTGCTAAGGCACAAGTGGTAGGGTGGCCACCAGTGCGGTCATTCCGTAAGAACATGTTTGCTGCCCAAAAGAGCAATGAAGGATCAGAAGAAAGTGAAAAGAAGAATAGCAATAATAATCCAATAAGCTTTGTGAAAGTTAGCATGGATGGAGCACCTTACCTCCGTAAAGTAGACCTCAAGATGTACAAGAGTTACCCAGAGCTCTCTGATGCCTTGGCCAAAATGTTTAACTCCTTTACCACAGGAAATTGTGAATCCCAAGGCATTAAGGATTTCATGAATGAGAGTAATAAGTTGATGGATCTATTGAACAGCTCCGACTATGTCCCAACTTATGAAGACAAAGATGGCGACTGGATGCTTGTCGGTGATGTACCATGGGAGATGTTTATTGATTCATGCAAGCGTCTACGTATCATGAAAGGAAAGGAAGCCATTGGACTCGCACCAAGAGCCATGGAAAAATGCAAGAACAGGAGCTAG 738 0.4282 MEVVAGMKKEEKMVFDETELRLGLGLPGKTTEVVRKRGFSETESESETNTVDLKLNLSTKEGATDPQFKPKEKALLLSDSGAKPPAKAQVVGWPPVRSFRKNMFAAQKSNEGSEESEKKNSNNNPISFVKVSMDGAPYLRKVDLKMYKSYPELSDALAKMFNSFTTGNCESQGIKDFMNESNKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFIDSCKRLRIMKGKEAIGLAPRAMEKCKNRS* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2458 245 ProSiteProfiles PB1 domain profile. 126 227 IPR000270 GO:0005515
Mtr1g2458 245 PANTHER AUXIN-INDUCED PROTEIN AUX28 9 238 - -
Mtr1g2458 245 SUPERFAMILY CAD & PB1 domains 119 226 - -
Mtr1g2458 245 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 9 238 IPR003311 GO:0005634|GO:0006355
Mtr1g2458 245 MobiDBLite consensus disorder prediction 106 126 - -
Mtr1g2458 245 Pfam AUX/IAA family 32 236 IPR033389 -
Mtr1g2458 245 Gene3D - 120 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2458 Mtr-Chr1 35254152 35257979 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2458 107 235 B3 DNA Binding Superfamily AT4G23980 31.008 1.54e-09 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Mtr1g2458 AUX_IAA 2.5e-83 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2458 K14484 - gmx:100780214 326.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g2458 1 35254152 35257979 Mtr1g2673 1 37752696 37755738 ECH
Mtr1g2458 1 35254152 35257979 Mtr1g2458 1 35254152 35257979 ECH