Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2450 ATGGAAGAAGTTGAACAAGCAAGCAGAACAGCTGTTGAAAGCTGTCATAGAGTTCTAAGTATGTTGTCTCAACCAAGGGATCAAGTTCATCATAGGAATTTAACTGTTGAAACTGGTGAAGCTGTGAATAGGTTCAAGAAAGTTGTGTCTTTGCTTCATGGTTTGGATCATTCAAGAGTTAGGAAGCTTAAAAATCTTCAAAATGTTCCTTATCCTCAAACTGCTTTCTTAGACAACCCAAATTGCAAAAGAAACATCATCAACCATCACACCAAAAATGTTCACTTTACTCAAACTACCTATCCTCAAAATTCAGTTCAGGAACTTGGTTCAACCCTAAGAAATCCACTTTCTCTTGGAAACCCTTCTTTGGAATTGAGTTCGAACGGGAAAAGTCCGCTTCACCTTGCTCAACAAGCTGCATCAACTCACTATCAATTCTATCAGCCGCAGCAACAGCATCATCACCAGCAGCAGCTGCAGCAACAAAGGTTGTTGATGCAGCAGCAGCAACAGCAGCAACAAATGAAGCATCAAGCTGAAATGATGTTCCGAAGGAACACCAGCGGCATAAGCCTTAATTTTGACAAGGCTACTAGCAGCACACCAACAATGTCGTCTACTAGGTCTTTCATTTCCTCCTTGAGCATAGACGGAAGCGTAGCAAACGTTGATGGAAGTTCCTTCCATTTGATAGGAGCTCCGATCTCTTCAGATCAGAATTCACAGCACAAGAGGAAATGTTCTGCTAGAGGTGATGAGGGAAGCTTGAAATGTAGTAGCAGTTCTAAATGTCATTGCTCAAAGAAAAGGAAGCATAGAGTGAAGAGATCAATTAAGGTGCCTGCTATCAGCAACAAGCTTGCGGATATCCCTCCTGATGATTACTCGTGGAGGAAGTACGGGCAGAAGCCTATCAAGGGCTCTCCTCACCCTAGGGGCTATTATAAATGCAGCAGCATGAGAGGCTGCCCTGCTAGGAAGCATGTTGAGAGGTGCTTGGATGAGCCTACTATGCTAATGGTTACCTATGAAGGCGAGCATAATCACGCCAAGGTACCAACACAACCTGCAAATGCATGA 1083 0.434 MEEVEQASRTAVESCHRVLSMLSQPRDQVHHRNLTVETGEAVNRFKKVVSLLHGLDHSRVRKLKNLQNVPYPQTAFLDNPNCKRNIINHHTKNVHFTQTTYPQNSVQELGSTLRNPLSLGNPSLELSSNGKSPLHLAQQAASTHYQFYQPQQQHHHQQQLQQQRLLMQQQQQQQQMKHQAEMMFRRNTSGISLNFDKATSSTPTMSSTRSFISSLSIDGSVANVDGSSFHLIGAPISSDQNSQHKRKCSARGDEGSLKCSSSSKCHCSKKRKHRVKRSIKVPAISNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLDEPTMLMVTYEGEHNHAKVPTQPANA* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2450 360 SMART WRKY_cls 292 352 IPR003657 GO:0003700|GO:0006355|GO:0043565
Mtr1g2450 360 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 2 359 IPR044810 GO:0003700
Mtr1g2450 360 Pfam WRKY DNA -binding domain 294 350 IPR003657 GO:0003700|GO:0006355|GO:0043565
Mtr1g2450 360 ProSiteProfiles WRKY domain profile. 287 350 IPR003657 GO:0003700|GO:0006355|GO:0043565
Mtr1g2450 360 PANTHER WRKY DNA-BINDING PROTEIN 21-RELATED 2 359 - -
Mtr1g2450 360 Pfam Plant zinc cluster domain 245 290 IPR018872 -
Mtr1g2450 360 Gene3D WRKY domain 275 354 IPR036576 GO:0003700|GO:0006355|GO:0043565
Mtr1g2450 360 SUPERFAMILY WRKY DNA-binding domain 290 351 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2450 Mtr-Chr1 35169171 35171957 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2450 1 356 WRKY Transcription Factor Family AT2G30590 56.883 1.03e-115 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Mtr1g2450 WRKY 7.9e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2450 - - gmx:100170681 511.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g2450 1 35169171 35171957 Mtr1g2450 1 35169171 35171957 ECH