Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2449 ATGGCGGATGTTGAACCAGAGGTAGCAGCACAAGGAGTGCCAAAGAAGAGAACATTTAAGAAGTTCAGTTTCCGTGGTGTTGATCTCGATGCTCTCTTGGATATGTCCACTGATGAACTTGTCAAGCTTTTCTCTTCTCGTGCACGTAGAAGGTTTCAACGTGGTTTGACCCGCAAACCTATGGCACTCATCAAGAAGCTCCGCAAGGCGAAAAGAGAAGCTCCACCTGGTGAGAAGCCAGAACCTGTGAGGACTCACCTCCGTAACATGATCATTGTACCTGAGATGATCGGTAGCATCATTGGTGTCTACAATGGAAAGACCTTCAACCAAGTTGAAATTAAGCCTGAAATGATTGGTCACTATTTGGCTGAATTCTCAATCTCTTACAAGCCTGTTAAGCATGGTAGGCCTGGTATTGGTGCCACTCACTCCTCCAGGTTTATTCCTCTCAAGTGA 459 0.4597 MADVEPEVAAQGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFSSRARRRFQRGLTRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK* 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2449 152 SUPERFAMILY Ribosomal protein S19 55 136 IPR023575 GO:0003735|GO:0005840|GO:0006412
Mtr1g2449 152 Pfam Ribosomal protein S19 50 135 IPR002222 GO:0003735|GO:0005840|GO:0006412
Mtr1g2449 152 PRINTS Ribosomal protein S19 family signature 85 104 IPR002222 GO:0003735|GO:0005840|GO:0006412
Mtr1g2449 152 PRINTS Ribosomal protein S19 family signature 105 117 IPR002222 GO:0003735|GO:0005840|GO:0006412
Mtr1g2449 152 PRINTS Ribosomal protein S19 family signature 117 132 IPR002222 GO:0003735|GO:0005840|GO:0006412
Mtr1g2449 152 TIGRFAM uS19_arch: ribosomal protein uS19 19 152 IPR005713 GO:0003735|GO:0006412|GO:0015935
Mtr1g2449 152 PIRSF RPS19p_RPS19a_RPS15e_RPS19o 8 152 IPR002222 GO:0003735|GO:0005840|GO:0006412
Mtr1g2449 152 ProSitePatterns Ribosomal protein S19 signature. 105 129 IPR020934 GO:0003723
Mtr1g2449 152 PANTHER RIBOSOMAL PROTEIN S19P FAMILY MEMBER 2 152 IPR002222 GO:0003735|GO:0005840|GO:0006412
Mtr1g2449 152 PANTHER 40S RIBOSOMAL PROTEIN S15-1-RELATED 2 152 - -
Mtr1g2449 152 Hamap 30S ribosomal protein S19 [rpsS]. 48 141 IPR002222 GO:0003735|GO:0005840|GO:0006412
Mtr1g2449 152 Gene3D 30s Ribosomal Protein S19; Chain A 9 152 IPR023575 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2449 Mtr-Chr1 35163272 35165383 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2449 1 152 Cytoplasmic Ribosomal Protein Gene Family AT5G09500 89.474 5.82e-96 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2449 K02958 - mnt:21407300 293.123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g2449 1 35163272 35165383 Mtr1g2449 1 35163272 35165383 ECH