Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2448 ATGGCAACCAAAGCTTCCAAACCTTCTCACCCTACTTATGAAGAGATGATTAAGGATGCAATTGTGACTTTGAAAGAGAGAACTGGTTCAAGTCAATTTGCAATTGCGAAATTCATTGAAGAGAAACACAAACAGCTTCCTTCAAATTTCAAGAAGCTATTGCTTCATAATTTGAAGAAGAACGTTGCTTCTGGAAAGCTTATTAAGGTTAAAGGTTCATTCAAGCTTTCTCCGGCGACGAAACCATCAGCGGAGAAAAAGCCTGCAGCCGCTAAGCCAAAGACAAAGGCAGTTGCTAAGGTGACGGCAGTGAAGGCCAAGCCCGGCCCTAAGCCCAAGGCTAAAGCTGTTGTCAAGACTAAGGTTGCTGCAAAAGCTAAACCTGTTGCTGCAAAGCCCAAGCCTGCTGCTGCCAAGCCCAAAGCTCCTGCTGCCAAACCTAAAGCTGCTGCTGCAAAGGCCAAACCTGCTGCCAAGGCAAAGACAGTTGTGAAACCTGCTAAGGCTTCAAGGACGTCGACGAGGACAACTCCGGGGAAGAAAGTTGTTGCTGCTAAGAAGCCAGCAGTGAAGAAAGCTGTGGCTGCTAAGAAAGCTCCGGTGAAGAAAGCTGTGGCAGCTAAGAAGTCTCCGGTGAAGAAAGTTGTGTCGACAAAGAGAGGGGGAAGGAAATGA 675 0.4726 MATKASKPSHPTYEEMIKDAIVTLKERTGSSQFAIAKFIEEKHKQLPSNFKKLLLHNLKKNVASGKLIKVKGSFKLSPATKPSAEKKPAAAKPKTKAVAKVTAVKAKPGPKPKAKAVVKTKVAAKAKPVAAKPKPAAAKPKAPAAKPKAAAAKAKPAAKAKTVVKPAKASRTSTRTTPGKKVVAAKKPAVKKAVAAKKAPVKKAVAAKKSPVKKVVSTKRGGRK* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2448 224 PANTHER HISTONE H1 4 224 - -
Mtr1g2448 224 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 9 78 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mtr1g2448 224 Gene3D - 4 100 IPR036388 -
Mtr1g2448 224 SUPERFAMILY "Winged helix" DNA-binding domain 6 88 IPR036390 -
Mtr1g2448 224 CDD H15 7 91 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mtr1g2448 224 PANTHER HISTONE H1.1 4 224 - -
Mtr1g2448 224 MobiDBLite consensus disorder prediction 77 185 - -
Mtr1g2448 224 SMART h15plus2 7 73 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mtr1g2448 224 MobiDBLite consensus disorder prediction 205 224 - -
Mtr1g2448 224 Pfam linker histone H1 and H5 family 10 77 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2448 Mtr-Chr1 35148680 35149776 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2448 14 87 Single Myb Histone (SMH) Gene Family AT1G49950 35.135 1.84e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2448 K11275 - cit:102626409 117.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g2448 1 35148680 35149776 Mtr1g2448 1 35148680 35149776 ECH