Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2446 ATGGATAATTATATCTTTGATATTCTGGTGATTGTCTTCTCTTCGTTTCTCGCAGCATTGTGTTTCGTACTTATCGCTTTAATCATAGTCCACACTTGCCGCCGGTTCCACCCTAACTCCTCCTCCTCCTCCTCGTTGAGCGACTTGGAATCCCTTGAATATGAAGTCGAGTCAACAACAACAGAGGAGGAGGCTCCACATGGCTTAGATGAGTCTGTTATATATGCTATTCCGTCCTTCATCTATACCACCGCAAAGTCTGAACAAGAAGAAGAATCTCGTGGTGAGTGTGTTGTTTGCTTGGAGGAGTACGAAGATAATGATCCCATTCGCATCCTTCCGTTTTGCTCCCACACTTTCCATCTCAATTGTATTGACGTTTGGCTTCGTTCTAACCCTAGCTGTCCTTTGTGTCGCTCATGTCTTTACTTTTTCGAGGAGGACTTTATGTTGAAACGCTCTAATGCATCTGGTTCCGAGCGGAGCTTGTCGCCTGAGAGAATGGTTGTCATTGACATCCCTGCCACCGCATCCCCATGGTAG 543 0.4586 MDNYIFDILVIVFSSFLAALCFVLIALIIVHTCRRFHPNSSSSSSLSDLESLEYEVESTTTEEEAPHGLDESVIYAIPSFIYTTAKSEQEEESRGECVVCLEEYEDNDPIRILPFCSHTFHLNCIDVWLRSNPSCPLCRSCLYFFEEDFMLKRSNASGSERSLSPERMVVIDIPATASPW* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2446 180 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 8 149 - -
Mtr1g2446 180 SUPERFAMILY RING/U-box 85 145 - -
Mtr1g2446 180 CDD RING-H2_PA-TM-RING 96 139 - -
Mtr1g2446 180 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 8 149 IPR044675 -
Mtr1g2446 180 ProSiteProfiles Zinc finger RING-type profile. 97 139 IPR001841 -
Mtr1g2446 180 SMART ring_2 97 138 IPR001841 -
Mtr1g2446 180 Pfam Ring finger domain 96 139 IPR001841 -
Mtr1g2446 180 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 54 143 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2446 Mtr-Chr1 35131983 35132525 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2446 56 179 Rapid Response to Elicitors AT3G05200 35.484 4.81e-22 89.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2446 - K19041 mtr:MTR_3g078450 122.864