Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2444 ATGGCCACAGAAGAACCAATCGTTGCAGTGGAACCTGTTCCCGAACCAACCATCGCTGCCGAACCTCCAGCTTCGGAGAAAGATCAGTCCGAACCAAAGGCTGCTGAATTAGCAGAGAAGAAGACGAAGAAAGTAGCAAAGGAATCCAAACCTAAGAAAGTTTCCAAACCACGAAACCCTGCTTCCCATCCTACTTACGAAGAGATGATTAAGGATGCAATTGTGTCGCTGAAGGAGAGGACTGGTTCAAGCCAATACGCAATTGCGAAATTCATCGAAGAGAAACACAAACAGCTTCCTTCAAATTTCAAGAAGTTATTGCTTCAGAATTTGAAGAAGAATGTTGCTTCTGGAAAACTTGTTAAGGTGAAAGGTTCATTCAAGCTCTCTTCGGCAACAAAGCCAGCTGCTAAGGTGAAGGCCAAGCCAGCCGCTAAGCCAAAGGCTAAAGCTGTTGTCAAGCCGAGGACCAAATCTGTAACTGCTAAGCCCAAGGCTGCTGCTGCCAAGCCCAAATCTGCTGCCACAAAGCCCAAAGCTGCTGTTGGTAAGGCCAAAACTGCTGCGAAAGTGAAGCCTAATGCAAAGGTTGCAAAGACAACGACAAGGACTTCTCCAGGGAAGAAAGTTGCAACTGCAAAGCCAGCAGCAAAGAAGAAAACTCCAGTGAAGAACGTGAAGCCTAAGACTAAGACTGTTAGGTCTCCGGCTAAGAAAGTTGCGATCAAGAGAGGGGGAAGGAAATGA 747 0.4672 MATEEPIVAVEPVPEPTIAAEPPASEKDQSEPKAAELAEKKTKKVAKESKPKKVSKPRNPASHPTYEEMIKDAIVSLKERTGSSQYAIAKFIEEKHKQLPSNFKKLLLQNLKKNVASGKLVKVKGSFKLSSATKPAAKVKAKPAAKPKAKAVVKPRTKSVTAKPKAAAAKPKSAATKPKAAVGKAKTAAKVKPNAKVAKTTTRTSPGKKVATAKPAAKKKTPVKNVKPKTKTVRSPAKKVAIKRGGRK* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2444 248 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 62 131 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mtr1g2444 248 PRINTS Histone H5 signature 49 70 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Mtr1g2444 248 PRINTS Histone H5 signature 76 93 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Mtr1g2444 248 PRINTS Histone H5 signature 153 167 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Mtr1g2444 248 PRINTS Histone H5 signature 205 224 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Mtr1g2444 248 SUPERFAMILY "Winged helix" DNA-binding domain 59 143 IPR036390 -
Mtr1g2444 248 MobiDBLite consensus disorder prediction 1 65 - -
Mtr1g2444 248 PANTHER HISTONE H1 2 248 - -
Mtr1g2444 248 Gene3D - 57 151 IPR036388 -
Mtr1g2444 248 PANTHER LINKER HISTONE H1 AND H5 FAMILY PROTEIN 2 248 - -
Mtr1g2444 248 SMART h15plus2 60 126 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mtr1g2444 248 MobiDBLite consensus disorder prediction 138 248 - -
Mtr1g2444 248 MobiDBLite consensus disorder prediction 26 45 - -
Mtr1g2444 248 CDD H15 60 132 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mtr1g2444 248 Pfam linker histone H1 and H5 family 63 130 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mtr1g2444 248 MobiDBLite consensus disorder prediction 220 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2444 Mtr-Chr1 35095846 35096861 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2444 51 129 Single Myb Histone (SMH) Gene Family AT1G72740 30.380 1.29e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2444 K11275 - gmx:100795994 152.525