Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2429 ATGGAATTCAGCTACCTTCAAGATGATTCAAAGAGCTCGAGCGATGAAAACATCGATCGATCATCTGACCAAAACAACGATGATGATCATGATCATCACATGGGAATTGGTAGATCCTATGAGTGTGTGTTTTGCAAAAGAGGTTTCACAACTGCTCAAGCTTTAGGTGGACACATGAACATTCATAGAAAAGATAGAGCAAATAACAACAAAAGTGCCACTAAAACCAATTTTGCTCCTCCTAGTTCAAGCAAATTAGTAGTTGATCATGATAACTATGGAGATCTTGGATTTTATTCAACAATTAATCCAAGTCATCTTGCAAGAGGGGGTTATTATTCTTCAATTTCATCCACAACAACTACTCCTGAGGTAGATTCTCTTAATTATCATCAAATATATTTTCCTTCACATGTTCAATATAGTGAGATGTTGTGTGTTGAAAATCAAAGGATGTTTGGACAAGATTGGAGGGGTTTGAGCTTGTATACAAATCCATTAAATAAAGACAAGATAGAAAACAACAATGAAGTGGGTGAATTGGATTTGGAGCTTAGACTTGGTCATTATCCATAG 576 0.3576 MEFSYLQDDSKSSSDENIDRSSDQNNDDDHDHHMGIGRSYECVFCKRGFTTAQALGGHMNIHRKDRANNNKSATKTNFAPPSSSKLVVDHDNYGDLGFYSTINPSHLARGGYYSSISSTTTTPEVDSLNYHQIYFPSHVQYSEMLCVENQRMFGQDWRGLSLYTNPLNKDKIENNNEVGELDLELRLGHYP* 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2429 191 ProSiteProfiles Zinc finger C2H2 type domain profile. 40 67 IPR013087 -
Mtr1g2429 191 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 7 191 - -
Mtr1g2429 191 Gene3D Classic Zinc Finger 12 90 - -
Mtr1g2429 191 Pfam C2H2-type zinc finger 40 64 - -
Mtr1g2429 191 MobiDBLite consensus disorder prediction 1 32 - -
Mtr1g2429 191 SUPERFAMILY beta-beta-alpha zinc fingers 38 66 IPR036236 -
Mtr1g2429 191 MobiDBLite consensus disorder prediction 12 32 - -
Mtr1g2429 191 ProSitePatterns Zinc finger C2H2 type domain signature. 42 62 IPR013087 -
Mtr1g2429 191 PANTHER OS07G0101800 PROTEIN 7 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2429 Mtr-Chr1 34878118 34879236 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2429 38 191 C2H2 Transcription Factor Family AT4G17810 31.847 9.57e-15 67.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mtr1g2429 zf-C2H2_6 1.7e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2429 - - gmx:102670484 202.216