Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2426 ATGGCTTCTGCAAATGGTTATAGCCCTAGATCCTCAGGATGTCCATGTGGGGCATGCAAATTTCTCCGTAGAAAGTGTACTTCTGAGTGCATATTTGCACCTTATTTTTGTTGTGAAGAAGGACCTGCAAGATTTGCAGCTATTCATAAAGTGTTTGGTGCTGGCAATGTTTCCAAGATGCTACTGAATTTACCTGTTCATGATCGTCATGATGCTGTTGTCGCAATTGCTTATGAAGCTCAAGCTCGTATTATAGATCCTGTGTATGGTTGTGTATCGCATATTTTTGCTTTACAACAACAGGTAGCAAGCTTGCAAGCACAGCTGATGCAAGTGAAAGCACAACAAATAATTAGTCAAAGCCTAGAGGAGGGGACAAAGAACTTGGAGAATCAATGCTGCAGCATCAATGATGTAATGACCATACAATGCCAATCTTACTCTAATAAAAGAATGACGTCATATCATTTGGGTGAGCGGCAAGAAACATCTCTGGGAATGACCGGAAACTATCATTAG 519 0.4085 MASANGYSPRSSGCPCGACKFLRRKCTSECIFAPYFCCEEGPARFAAIHKVFGAGNVSKMLLNLPVHDRHDAVVAIAYEAQARIIDPVYGCVSHIFALQQQVASLQAQLMQVKAQQIISQSLEEGTKNLENQCCSINDVMTIQCQSYSNKRMTSYHLGERQETSLGMTGNYH* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2426 172 Coils Coil 95 115 - -
Mtr1g2426 172 Pfam Lateral organ boundaries (LOB) domain 15 113 IPR004883 -
Mtr1g2426 172 ProSiteProfiles LOB domain profile. 14 116 IPR004883 -
Mtr1g2426 172 PANTHER LOB DOMAIN CONTAINING PROTEIN 9 150 - -
Mtr1g2426 172 PANTHER LOB DOMAIN-CONTAINING PROTEIN 16 9 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2426 Mtr-Chr1 34846686 34849569 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2426 1 148 AS2 family AT2G42430 64.865 4.76e-62 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Mtr1g2426 LOB 7.5e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2426 K13944 - oeu:111392033 188.348
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g2426 1 34846686 34849569 Mtr1g2426 1 34846686 34849569 ECH
Mtr7g2880 7 45599993 45601649 Mtr1g2426 1 34846686 34849569 PCT