Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2425 ATGGCTGGTTCTAGTTCTGTGTCTTCTGGTTCTCCTTGTGGAGCTTGCAAATTTTTGAGAAGAAAATGTATAAGAGGTTGTGTTTTTGCACCTTATTTTTCTCATGAACAAGGTGCTACACATTTTTCAGCCATTCATAAGGTTTTTGGTGCAAGCAATGTCTCAAAGCTTCTTGCTCATCTCCCTGTAAGTGATCGCTGCGAAGCCGCTGTTACAATCTCTTATGAAGCTCAAGCTAGACTTCAAGATCCTATTTATGGATGTGTTTCACATATTTTTGCCCTACAACAACAGGTGGTCAGTTTACAAACACAACTGGCTTATCTCAAAGAACAAGCAGCACAAAATTGTCACATTAATGCATCTACCAATGAAAACCCTAATGAAAAATCTAATTCTCTTACTCTCCCTCAAGATCTTCAAACTTGGTTCCATGTGGAAAATTCCAATAATCACCAACTTGGGCAAGAATTTATTACTAATAACTTGTCTAATATTTCCTTAACAACACAATATTATGGGAACAATACTCTCAACATGGATCTAGACCCTATGAGGAATTATGAAAATTCAAGAGTCATTGAAGAAAACACTTCATTTTCTAGCTTTGAGGAAAGTACTTCTAATTCCATGGAAACAAACAGGAGGACATGGGGATTTGATGAAGTTGAGGACCTACATTCAGTGGCTTTTGGATACAGTTGA 705 0.3716 MAGSSSVSSGSPCGACKFLRRKCIRGCVFAPYFSHEQGATHFSAIHKVFGASNVSKLLAHLPVSDRCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVVSLQTQLAYLKEQAAQNCHINASTNENPNEKSNSLTLPQDLQTWFHVENSNNHQLGQEFITNNLSNISLTTQYYGNNTLNMDLDPMRNYENSRVIEENTSFSSFEESTSNSMETNRRTWGFDEVEDLHSVAFGYS* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2425 234 ProSiteProfiles LOB domain profile. 11 113 IPR004883 -
Mtr1g2425 234 Pfam Lateral organ boundaries (LOB) domain 12 110 IPR004883 -
Mtr1g2425 234 PANTHER LOB DOMAIN-CONTAINING PROTEIN-RELATED 8 233 - -
Mtr1g2425 234 PANTHER LOB DOMAIN CONTAINING PROTEIN 8 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2425 Mtr-Chr1 34818915 34820361 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2425 12 233 AS2 family AT3G58190 51.570 3.21e-69 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Mtr1g2425 LOB 9.8e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2425 K13945 - gmx:100776678 321.242
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g2425 1 34818915 34820361 Mtr1g2425 1 34818915 34820361 ECH
Mtr7g2883 7 45620357 45621799 Mtr1g2425 1 34818915 34820361 PCT