Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2416 ATGGCAATGAACAAGAACCAATTCTACAAGCTTGGATACCAAGCTCTACCACCTATCATAACTCAGGATAATACATTTTATCCTCACCCTCCACAACCTGTTTCAGACTATGCTTTTCCAATATTTGCCATTGTTGTTCTAAGCATCATGGCTACCATTTTGTTGCTCCTCAGCTACTTCACCTTTTTAACCAAGTGCTGCTCAAACTGGAACCAAGTTAACCCAACGAGATGGATTTCGGTTCTTCGAGTTCGACAGAACGAGGAAGATCATTTCATAGCATTGTCTCCTACATTGTGGAACCGAGGACTAGACGAATCAGTCATCAGAGAAATCCCATCTTTTCAGTTTATAAAAGGAGAATGTGAGGATCAAAGTGTGTATGGTTGTGTGGTTTGTTTGACAGAGTTTCAAGAACAGGATGTGATAAAAATTCTTCCAAATTGCAACCATGCTTTTCACTTGGATTGCATTGATATTTGGCTTCAAACAAATTCTAATTGTCCTCTTTGTAGATCAAGCATTTCAGGAAATACAACAAATACTCAATTTGACATTATCATAGCTCCAAGTTCTTCTCCTCAGGATTCTCAGTTACTCTCTAACTTAGGTAGTGATGAAGATTATGTGGTCATTGAATTGGGTGGTGGAGAAAATGAGGTTGAACAAGAAAGAAATGAGTCAAGGGGAAGCATAGAACATAGTAGAAATTATCACTCCACGAGGAAAATGAAACCAAAGAAGTGTCATCATGTTTCCATCATGGGAGATGAGTGCATTAATATTATCAGAAAGAAAGATGAAACATTTTCGATCCAGCCGATTCGAAGATCTTTCTCGATGGATTCTGCAAATGACAGACAAGTTTTCATGGATGTTCAAGCCATTATGCAACAAAATAGGCACCACCAGAACGAAGCTAGTGCAAGTGAGGATTGTAATAGCAGAAGTAGAAGACAGTTCTTTCCATTTTGTTATTATGGAAAGGGATCCAAAAATGCAGTTCTTCCTTTTGGAGAATGA 1023 0.3832 MAMNKNQFYKLGYQALPPIITQDNTFYPHPPQPVSDYAFPIFAIVVLSIMATILLLLSYFTFLTKCCSNWNQVNPTRWISVLRVRQNEEDHFIALSPTLWNRGLDESVIREIPSFQFIKGECEDQSVYGCVVCLTEFQEQDVIKILPNCNHAFHLDCIDIWLQTNSNCPLCRSSISGNTTNTQFDIIIAPSSSPQDSQLLSNLGSDEDYVVIELGGGENEVEQERNESRGSIEHSRNYHSTRKMKPKKCHHVSIMGDECINIIRKKDETFSIQPIRRSFSMDSANDRQVFMDVQAIMQQNRHHQNEASASEDCNSRSRRQFFPFCYYGKGSKNAVLPFGE* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2416 340 SMART ring_2 130 171 IPR001841 -
Mtr1g2416 340 Pfam Ring finger domain 130 172 IPR001841 -
Mtr1g2416 340 CDD RING-H2_PA-TM-RING 130 172 - -
Mtr1g2416 340 PANTHER RING-H2 FINGER PROTEIN ATL16 1 338 IPR044600 GO:0016567|GO:0016740
Mtr1g2416 340 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 338 - -
Mtr1g2416 340 SUPERFAMILY RING/U-box 129 179 - -
Mtr1g2416 340 MobiDBLite consensus disorder prediction 218 239 - -
Mtr1g2416 340 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 95 177 IPR013083 -
Mtr1g2416 340 MobiDBLite consensus disorder prediction 217 247 - -
Mtr1g2416 340 ProSiteProfiles Zinc finger RING-type profile. 130 172 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2416 Mtr-Chr1 34726101 34727587 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2416 30 302 C3H Transcription Factor Family AT1G04360 44.839 4.20e-67 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2416 K19041 - gmx:100809883 490.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g2416 1 34726101 34727587 Mtr1g2416 1 34726101 34727587 ECH
Mtr1g2416 1 34726101 34727587 Mtr7g2887 7 45675115 45676429 PCT