Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2407 ATGGAAGAGGAAAATTCAAAGGAGAAGAATGACAAACAAGAGTCACCAAAAGAAATTCGATACCGAGGAGTGAGGCGTCGTCCATGGGGAAAGTTTGCGGCTGAGATTCGGGACCCAGCTAGACGCGGTGCACGCGTGTGGCTAGGCACATTTCTCACCGCGGAGGAAGCTGCAAGAGCTTATGATCGTGCTGCTTTTGAGATGAGAGGTGCTTTAGCAATTCTCAACTTTCCACATGAATATTCAATTGTTAACTCCTCTTCATCATCATTAGCACCTAATTCATCTTCAGCTTCATGCTATGAATCATCATCAACGTCAAATTACCAAAGTGAGCATGGGAAACAAGTCATTGAATTTGAGTATTTGGATGATAAATTGTTAGAGGATCTTCTTGATTGTGATGAAAGTGAAACCACTCGTAAAAACTTGCCAAAGTAG 441 0.424 MEEENSKEKNDKQESPKEIRYRGVRRRPWGKFAAEIRDPARRGARVWLGTFLTAEEAARAYDRAAFEMRGALAILNFPHEYSIVNSSSSSLAPNSSSASCYESSSTSNYQSEHGKQVIEFEYLDDKLLEDLLDCDESETTRKNLPK* 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2407 146 SMART rav1_2 20 84 IPR001471 GO:0003700|GO:0006355
Mtr1g2407 146 Gene3D AP2/ERF domain 19 79 IPR036955 GO:0003700|GO:0006355
Mtr1g2407 146 SUPERFAMILY DNA-binding domain 20 80 IPR016177 GO:0003677
Mtr1g2407 146 CDD AP2 20 79 IPR001471 GO:0003700|GO:0006355
Mtr1g2407 146 PRINTS Ethylene responsive element binding protein signature 21 32 IPR001471 GO:0003700|GO:0006355
Mtr1g2407 146 PRINTS Ethylene responsive element binding protein signature 44 60 IPR001471 GO:0003700|GO:0006355
Mtr1g2407 146 PANTHER BNAA01G23960D PROTEIN 1 136 - -
Mtr1g2407 146 Pfam AP2 domain 20 70 IPR001471 GO:0003700|GO:0006355
Mtr1g2407 146 MobiDBLite consensus disorder prediction 1 22 - -
Mtr1g2407 146 PANTHER DNA-BINDING DOMAIN 1 136 IPR044808 GO:0003700|GO:0009873
Mtr1g2407 146 ProSiteProfiles AP2/ERF domain profile. 20 78 IPR001471 GO:0003700|GO:0006355
Mtr1g2407 146 MobiDBLite consensus disorder prediction 85 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2407 Mtr-Chr1 34661891 34662642 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2407 17 136 AP2-EREBP Transcription Factor Family AT3G23230 62.810 3.36e-45 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mtr1g2407 AP2 7.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2407 - - gmx:100810414 154.836
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g2407 1 34661891 34662642 Mtr1g2407 1 34661891 34662642 ECH
Mtr1g2407 1 34661891 34662642 Mtr7g2890 7 45691155 45691900 PCT