Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2406 ATGAGTAGCTCTTTTTTCCATAACCCAGATTTGGAAATGTTGCAGCAAGATCTTACTAATATTCTGTTTGAACCATTTCATCAAGACCCTTATATTCATGATTATCTTTCTTTTTACATGGTTGACCAACAAGGACCAAACAAAAACGAACCAAATAATTCAATGAATAATTCTGAACCTAAAGAAGAAAGATCATATATAGGTGTGAGGAAGAGACCTTGGGGGAAATTTGCTGCAGAGATTAGAGATACAACAAGAGGAGGAAGAAGGGTTTGGCTTGGAACATTTGATAGTGCTGAAGATGCTGCTTTAGCTTATGATCAAGCTGCATTTTCAATGAGAGGTTATGATGCTGTGCTCAATTTTTCTGTTCAAAGGGTCAAAGAATCTTTGCAAGCGATTCAATATGATTGCAGAGAAGGGTCTTCACCTGCACTTGCACTAAAAGAGAGGCACTATGAACAAAGAAAGATGTTATCATTCACCTTAATATTAAGACAAAGACATAACATTTAG 516 0.3605 MSSSFFHNPDLEMLQQDLTNILFEPFHQDPYIHDYLSFYMVDQQGPNKNEPNNSMNNSEPKEERSYIGVRKRPWGKFAAEIRDTTRGGRRVWLGTFDSAEDAALAYDQAAFSMRGYDAVLNFSVQRVKESLQAIQYDCREGSSPALALKERHYEQRKMLSFTLILRQRHNI* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2406 171 MobiDBLite consensus disorder prediction 46 61 - -
Mtr1g2406 171 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 15 49 156 - -
Mtr1g2406 171 SMART rav1_2 65 129 IPR001471 GO:0003700|GO:0006355
Mtr1g2406 171 Pfam AP2 domain 66 115 IPR001471 GO:0003700|GO:0006355
Mtr1g2406 171 PANTHER DNA-BINDING DOMAIN 49 156 IPR044808 GO:0003700|GO:0009873
Mtr1g2406 171 ProSiteProfiles AP2/ERF domain profile. 65 123 IPR001471 GO:0003700|GO:0006355
Mtr1g2406 171 SUPERFAMILY DNA-binding domain 66 124 IPR016177 GO:0003677
Mtr1g2406 171 Gene3D AP2/ERF domain 65 125 IPR036955 GO:0003700|GO:0006355
Mtr1g2406 171 PRINTS Ethylene responsive element binding protein signature 66 77 IPR001471 GO:0003700|GO:0006355
Mtr1g2406 171 PRINTS Ethylene responsive element binding protein signature 89 105 IPR001471 GO:0003700|GO:0006355
Mtr1g2406 171 CDD AP2 66 122 IPR001471 GO:0003700|GO:0006355
Mtr1g2406 171 MobiDBLite consensus disorder prediction 46 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2406 Mtr-Chr1 34644386 34644901 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2406 58 158 AP2-EREBP Transcription Factor Family AT3G23240 67.327 1.17e-44 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Mtr1g2406 AP2 7.8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2406 K14516 - gmx:100527364 182.185
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g2406 1 34644386 34644901 Mtr7g2892 7 45699069 45699891 PCT