Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2405 ATGAGTCTCCCCTTTTTCCTAAACTCAGATATGGAAATGCTGCAACAAAGCCCTTCGGAAATTCCCTTCGAATCATTAGGTATTCATGATTGTCTTACCTTTGATATGGTTGATTTCTCATCGAGTTTGCAGACAATAATTAACGAAAACGAGCCAAAACAATCAATGTTGAAGTCATCTGAAGCTAAACAAGTAATGCAGAACATTTATAAGATTGATCAAAAGTCATATATAGGTGTTAGGAAAAGACGTTGGGGAAAATATGCTGCAGAAATCAGAGATACAACAAGAGGAGGAAGAAGGGTTTGGCTAGGAACATTTGATAGTGCTGAAGATGCTGCTTTAGCTTATGATCAAGCTGCATTTTCAATGAGAGGTAATAATGCTTTCCTCAATTTTTCTTTCGAAAGCGTCAAAGAATCTTTGCAAGAGATTCAATATGATTGCAGAAAAGGGTCTTCACCTGCACTTGCACTCAAAGAGAGACACTACAACCAAAGAAAATTAAGGTCATCGTCAAAAAGTAAAAAGGGTAAAGCAGGGAAATTTCAAGAATCAGCAGAGGGATCATCAAGTGTGTTGGTGTTAGAGGATTTGGGAGTTGAATATCTTGAGCAACTTCTAAGTATGTCAGATAATCAAAGTACAAGCTTAACCAACTTCTAA 666 0.3694 MSLPFFLNSDMEMLQQSPSEIPFESLGIHDCLTFDMVDFSSSLQTIINENEPKQSMLKSSEAKQVMQNIYKIDQKSYIGVRKRRWGKYAAEIRDTTRGGRRVWLGTFDSAEDAALAYDQAAFSMRGNNAFLNFSFESVKESLQEIQYDCRKGSSPALALKERHYNQRKLRSSSKSKKGKAGKFQESAEGSSSVLVLEDLGVEYLEQLLSMSDNQSTSLTNF* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2405 221 Pfam AP2 domain 76 126 IPR001471 GO:0003700|GO:0006355
Mtr1g2405 221 ProSiteProfiles AP2/ERF domain profile. 76 134 IPR001471 GO:0003700|GO:0006355
Mtr1g2405 221 PANTHER DNA-BINDING DOMAIN 36 209 IPR044808 GO:0003700|GO:0009873
Mtr1g2405 221 Gene3D AP2/ERF domain 75 135 IPR036955 GO:0003700|GO:0006355
Mtr1g2405 221 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 15 36 209 - -
Mtr1g2405 221 PRINTS Ethylene responsive element binding protein signature 77 88 IPR001471 GO:0003700|GO:0006355
Mtr1g2405 221 PRINTS Ethylene responsive element binding protein signature 100 116 IPR001471 GO:0003700|GO:0006355
Mtr1g2405 221 SMART rav1_2 76 140 IPR001471 GO:0003700|GO:0006355
Mtr1g2405 221 SUPERFAMILY DNA-binding domain 76 135 IPR016177 GO:0003677
Mtr1g2405 221 CDD AP2 75 133 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2405 Mtr-Chr1 34635995 34636793 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2405 74 216 AP2-EREBP Transcription Factor Family AT3G23240 57.343 2.87e-50 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mtr1g2405 AP2 3.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2405 K14516 - gmx:100811486 224.557
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g2405 1 34635995 34636793 Mtr1g2405 1 34635995 34636793 ECH