Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2404 ATGCATATGATGAGTAGCTCTTACTTCAATAACCCAGATTTGGAAATGTTGCAACAAGATCCTACTAATATTCTCTTTGAACCATTTCATCATGACCCTAATATTCATGATTATCTTTCCTTTGACATGGTTGACCAACAAGGACCAACAAAAAATGAACCAAATCATGAACTAGTGAAGAACTTTCAAACTAAAGAAGAAAGATCATATATAGGTGTGAGGAAGAGACCTTGGGGGAAATTTGCTGCAGAGATCAGAGATACAACAAGAGGAGGAAGAAGAGTTTGGCTAGGAACATTTGATAGTGCTGAAGATGCTGCTTTAGCTTATGATCAAGCTGCATTCTCAATGAGAGGTAATAATGCTGTGCTCAATTTTTCTGTTCAAAGGGTCAAAGAATCTTTGCAAGAGATTCAATATGATTGCAGAAAAGGATCTTCACCTGCACTTGCACTAAAAGAAAGGCACTATGAACAAAGAAAAATGTTATCAAAAGCTACAAAGAATAATAAAGCAGGGAAACAAGATGAATCAGAGGGATCAAGTGTTTTGGTGTTAGAGGATTTGGGAGTTGAATATCTCGAGCAACTTCTAACAATATCTGATAATCAAAGTTCAAGCAGCAACAGCAAGTTCAAATCATCAGGTTGTTAA 654 0.3624 MHMMSSSYFNNPDLEMLQQDPTNILFEPFHHDPNIHDYLSFDMVDQQGPTKNEPNHELVKNFQTKEERSYIGVRKRPWGKFAAEIRDTTRGGRRVWLGTFDSAEDAALAYDQAAFSMRGNNAVLNFSVQRVKESLQEIQYDCRKGSSPALALKERHYEQRKMLSKATKNNKAGKQDESEGSSVLVLEDLGVEYLEQLLTISDNQSSSSNSKFKSSGC* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2404 217 MobiDBLite consensus disorder prediction 161 181 - -
Mtr1g2404 217 MobiDBLite consensus disorder prediction 161 175 - -
Mtr1g2404 217 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 40 201 - -
Mtr1g2404 217 SMART rav1_2 69 133 IPR001471 GO:0003700|GO:0006355
Mtr1g2404 217 Pfam AP2 domain 70 119 IPR001471 GO:0003700|GO:0006355
Mtr1g2404 217 PRINTS Ethylene responsive element binding protein signature 70 81 IPR001471 GO:0003700|GO:0006355
Mtr1g2404 217 PRINTS Ethylene responsive element binding protein signature 93 109 IPR001471 GO:0003700|GO:0006355
Mtr1g2404 217 CDD AP2 70 126 IPR001471 GO:0003700|GO:0006355
Mtr1g2404 217 PANTHER DNA-BINDING DOMAIN 40 201 IPR044808 GO:0003700|GO:0009873
Mtr1g2404 217 SUPERFAMILY DNA-binding domain 70 128 IPR016177 GO:0003677
Mtr1g2404 217 ProSiteProfiles AP2/ERF domain profile. 69 127 IPR001471 GO:0003700|GO:0006355
Mtr1g2404 217 Gene3D AP2/ERF domain 69 129 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2404 Mtr-Chr1 34623971 34624826 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2404 65 203 AP2-EREBP Transcription Factor Family AT3G23240 60.140 3.36e-54 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mtr1g2404 AP2 6e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2404 K14516 - gmx:100527364 231.491
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g2404 1 34623971 34624826 Mtr1g2605 1 36981884 36983228 ECH
Mtr1g2404 1 34623971 34624826 Mtr1g2404 1 34623971 34624826 ECH