Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2403 ATGACTCATAGGAGTTGTCCCTCTTTGTTCCACAACCCAGATATGGAAATGCAGCAAGGCCCTTCAGAAATTTCCTTTGAATTATTTGATATTAATCATGATTTTCTTTCCTTTGATATGGTTGATTTCTCATCGAGTTCGCAGACACCAATTACCAAAAACGAGCCAAAACAATTGATGTTGAAGTCATCATCATCTGAAGCAAACGAAGTGTTGCAGAATAATACTAAGATGGATCAAAAATCATCATATATAGGTGTAAGAAAAAGACCTTGGGGAAAGTATGCAGCAGAGATCAGAGACACAACAAGAGGAGGAAGAAGGGTTTGGCTTGGAACATTTGATAGTGCTGAAGATGCTGCTTTAGCTTATGATCAAGCTGCATTTTCAATGAGAGGTTATGATGCTGTGCTCAATTTTTCTGTTCAAAGGGTCAAAGAATCTTTGCAAGAGATTCAATATGATTGCAGAGAAGGGTCTTCACCTGCACTTGCACTAAAAGAGAGGCACTATGAACAAAGAAAGATGTTATCAAAAGGTGTAAAGAATAAAGCAGGGAAACAAGATGAATCAGAAGGATCAAGTGTTTTGGTGTTAGAGGATTTGGGAGTTGAATATCTTGAGCAACTTCTATCCATATCTGATAATCAAAGTACAAGCAGCAACAGCTAG 672 0.378 MTHRSCPSLFHNPDMEMQQGPSEISFELFDINHDFLSFDMVDFSSSSQTPITKNEPKQLMLKSSSSEANEVLQNNTKMDQKSSYIGVRKRPWGKYAAEIRDTTRGGRRVWLGTFDSAEDAALAYDQAAFSMRGYDAVLNFSVQRVKESLQEIQYDCREGSSPALALKERHYEQRKMLSKGVKNKAGKQDESEGSSVLVLEDLGVEYLEQLLSISDNQSTSSNS* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2403 223 PRINTS Ethylene responsive element binding protein signature 84 95 IPR001471 GO:0003700|GO:0006355
Mtr1g2403 223 PRINTS Ethylene responsive element binding protein signature 107 123 IPR001471 GO:0003700|GO:0006355
Mtr1g2403 223 Pfam AP2 domain 83 133 IPR001471 GO:0003700|GO:0006355
Mtr1g2403 223 CDD AP2 82 140 IPR001471 GO:0003700|GO:0006355
Mtr1g2403 223 SUPERFAMILY DNA-binding domain 82 142 IPR016177 GO:0003677
Mtr1g2403 223 PANTHER DNA-BINDING DOMAIN 42 212 IPR044808 GO:0003700|GO:0009873
Mtr1g2403 223 Gene3D AP2/ERF domain 83 143 IPR036955 GO:0003700|GO:0006355
Mtr1g2403 223 ProSiteProfiles AP2/ERF domain profile. 83 141 IPR001471 GO:0003700|GO:0006355
Mtr1g2403 223 SMART rav1_2 83 147 IPR001471 GO:0003700|GO:0006355
Mtr1g2403 223 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 15 42 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2403 Mtr-Chr1 34615240 34615982 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2403 46 219 AP2-EREBP Transcription Factor Family AT3G23240 51.149 3.39e-53 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mtr1g2403 AP2 5.5e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2403 K14516 - gmx:100527364 226.868
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g2403 1 34615240 34615982 Mtr1g2403 1 34615240 34615982 ECH