Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2402 ATGCCTTATAGGATGAGTTCCTCTTTGTTCCACAACCCAGATATGGAAATGCTGCAAAGCCCTTCTGAAATTTCCTTTGAATCATTTGGTATTAATCATGATTTTCTTTCCTTTGATATGGTTGATTTCTCATCGAGTTCGCAGACACCAGTTACCGAAAACGAGCCAAAACAATTGATGTTGAAGTCATCATCATCTGAAGCAAAAGAAGTGTTGCAGAATAATAATAAGATGAATCAAAAGTCATCATTAATAGGTGTAAGAAAAAGACCTTGGGGGAAATATGCTGCAGAAATAAGAGACACAACAAGGGGTGGTAAAAGGGTTTGGCTTGGAACATTTGACAGTGCTGAAGATGCTGCTTTAGCTTATGATCAAGCTGCATTTTCAATGAGAGGTAATAATGCCGTGCTCAATTTTTCTGTTCAAAGGGTCAAAGAATCTTTGCAAGAGATTCAATATGATTGCAGAGAAGGGTCTTCACCTGCACTTGCACTCAAGGAGAGACACTGTGAACAAAGAAAAATGTTATCAAAAGCTACAAAGAATAATAAAGCAGGGAAACAAGATCAATCAGAGGGATCAAGTGTTTTGGTGTTAGAGGATTTGGGAGTTGAATATCTTGAGCAACTTTTAACTATGTCAGATCATCAAAGTACAAGCACCAGCTACTTCTGA 678 0.3776 MPYRMSSSLFHNPDMEMLQSPSEISFESFGINHDFLSFDMVDFSSSSQTPVTENEPKQLMLKSSSSEAKEVLQNNNKMNQKSSLIGVRKRPWGKYAAEIRDTTRGGKRVWLGTFDSAEDAALAYDQAAFSMRGNNAVLNFSVQRVKESLQEIQYDCREGSSPALALKERHCEQRKMLSKATKNNKAGKQDQSEGSSVLVLEDLGVEYLEQLLTMSDHQSTSTSYF* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2402 225 Coils Coil 61 81 - -
Mtr1g2402 225 Pfam AP2 domain 85 133 IPR001471 GO:0003700|GO:0006355
Mtr1g2402 225 ProSiteProfiles AP2/ERF domain profile. 83 141 IPR001471 GO:0003700|GO:0006355
Mtr1g2402 225 PANTHER DNA-BINDING DOMAIN 43 213 IPR044808 GO:0003700|GO:0009873
Mtr1g2402 225 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 15 43 213 - -
Mtr1g2402 225 SMART rav1_2 86 147 IPR001471 GO:0003700|GO:0006355
Mtr1g2402 225 Gene3D AP2/ERF domain 85 143 IPR036955 GO:0003700|GO:0006355
Mtr1g2402 225 CDD AP2 86 140 IPR001471 GO:0003700|GO:0006355
Mtr1g2402 225 PRINTS Ethylene responsive element binding protein signature 84 95 IPR001471 GO:0003700|GO:0006355
Mtr1g2402 225 PRINTS Ethylene responsive element binding protein signature 107 123 IPR001471 GO:0003700|GO:0006355
Mtr1g2402 225 SUPERFAMILY DNA-binding domain 83 142 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2402 Mtr-Chr1 34597285 34598020 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2402 46 220 AP2-EREBP Transcription Factor Family AT3G23240 50.279 1.17e-52 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Mtr1g2402 AP2 1.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2402 K14516 - gmx:100812017 235.343