Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2401 ATGAATCACTCTTTTTTCCAGAACCCAAATACGGAAATGCTGCAAGACCCTTCAGAAATTTCGTTCGACTCATTTGGCATTCATGATTATCCAATTCCTGATTCTCTTTCCTTCGATATGGTTGATTTCTCATATAGTTCAAATGAACCAACAAAAAGTAAATCAATGTTGAAGTCATCGGCTGAAGCAAAACAAGAACATAATAGGATGGATCAGAAGCCATATATAGGTGTGAGGAAAAGACCTTGGGGGAAATATGCTGCAGAAATAAGGGACACAACAAGGGGTGGCAAAAGGGTTTGGTTAGGAACATTTGATAGTGCTGAAGATGCTGCTTTAGCTTATGATCAAGCTGCATTTTCAATGAGAGGTAATAATGCTGTGCTCAATTTTTCTGTTCAAAGGGTCAAAGAATCTTTGCAAGAGATTCAATATGATTGCAGAAAAGGATCTTCACCTGCACTTGCACTAAAAGAGAGGCACTATGAACAAAGAAAGTTGTTATCAAAAGGTGTAAAGAATAATAAAGCAGGGAGACAAGATGAATCAGAAGGATCAAGTGTTTTGGTGTTAGAGGATTTGGGAGTTGAATATCTTGAGCAACTTCTAACCATATCTGATAATCAAACTACAAGCAACTTCTACTGA 648 0.3735 MNHSFFQNPNTEMLQDPSEISFDSFGIHDYPIPDSLSFDMVDFSYSSNEPTKSKSMLKSSAEAKQEHNRMDQKPYIGVRKRPWGKYAAEIRDTTRGGKRVWLGTFDSAEDAALAYDQAAFSMRGNNAVLNFSVQRVKESLQEIQYDCRKGSSPALALKERHYEQRKLLSKGVKNNKAGRQDESEGSSVLVLEDLGVEYLEQLLTISDNQTTSNFY* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2401 215 MobiDBLite consensus disorder prediction 48 69 - -
Mtr1g2401 215 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 15 43 204 - -
Mtr1g2401 215 Pfam AP2 domain 75 124 IPR001471 GO:0003700|GO:0006355
Mtr1g2401 215 CDD AP2 75 131 IPR001471 GO:0003700|GO:0006355
Mtr1g2401 215 SMART rav1_2 74 138 IPR001471 GO:0003700|GO:0006355
Mtr1g2401 215 ProSiteProfiles AP2/ERF domain profile. 74 132 IPR001471 GO:0003700|GO:0006355
Mtr1g2401 215 PANTHER DNA-BINDING DOMAIN 43 204 IPR044808 GO:0003700|GO:0009873
Mtr1g2401 215 SUPERFAMILY DNA-binding domain 75 133 IPR016177 GO:0003677
Mtr1g2401 215 Gene3D AP2/ERF domain 74 134 IPR036955 GO:0003700|GO:0006355
Mtr1g2401 215 PRINTS Ethylene responsive element binding protein signature 75 86 IPR001471 GO:0003700|GO:0006355
Mtr1g2401 215 PRINTS Ethylene responsive element binding protein signature 98 114 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2401 Mtr-Chr1 34582126 34582832 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2401 64 211 AP2-EREBP Transcription Factor Family AT3G23240 55.405 5.43e-52 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Mtr1g2401 AP2 5.6e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2401 K14516 - gmx:100527364 231.491
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g2401 1 34582126 34582832 Mtr1g2401 1 34582126 34582832 ECH