Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2400 ATGGAGGGAGATCATAAATTAGTTTCAAATTCAACAAATGGAAATGGAAATGGAAATGGAAATTCAGATCAAATAAAGTATAGAGGAATTCGTAGAAGACCATGGGGAAAATTTGCAGCAGAAATTCGTGACCCAACAAGGAAAGGGACAAGAATATGGCTTGGAACATTTGATACTGCTGAACAAGCTGCAAGAGCTTATGATGCTGCTGCTTTTCATTTTCGTGGTCATAGAGCTATTCTCAATTTCCCTAATGAATATCAAGCTCCTAATTCATCTTCTTCATTACCTATGCCTCTTACTATGCCTCCACCACCTTCTTCTAATCCACCTCCTTCTTCTTCTTCTTCTTCCTCTTTTTCTTCTTACACCGTTGATGATGGTTTTGATGAGCTTGAATTCTTGGATAATAAGTTGCTTCAAGAACTTCTTCAAGATGGAACACAATAG 450 0.3756 MEGDHKLVSNSTNGNGNGNGNSDQIKYRGIRRRPWGKFAAEIRDPTRKGTRIWLGTFDTAEQAARAYDAAAFHFRGHRAILNFPNEYQAPNSSSSLPMPLTMPPPPSSNPPPSSSSSSSFSSYTVDDGFDELEFLDNKLLQELLQDGTQ* 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2400 149 MobiDBLite consensus disorder prediction 85 124 - -
Mtr1g2400 149 Pfam AP2 domain 26 77 IPR001471 GO:0003700|GO:0006355
Mtr1g2400 149 PANTHER DNA-BINDING DOMAIN 13 96 IPR044808 GO:0003700|GO:0009873
Mtr1g2400 149 SMART rav1_2 26 90 IPR001471 GO:0003700|GO:0006355
Mtr1g2400 149 MobiDBLite consensus disorder prediction 97 112 - -
Mtr1g2400 149 ProSiteProfiles AP2/ERF domain profile. 26 84 IPR001471 GO:0003700|GO:0006355
Mtr1g2400 149 SUPERFAMILY DNA-binding domain 26 85 IPR016177 GO:0003677
Mtr1g2400 149 MobiDBLite consensus disorder prediction 1 24 - -
Mtr1g2400 149 Gene3D AP2/ERF domain 25 85 IPR036955 GO:0003700|GO:0006355
Mtr1g2400 149 PRINTS Ethylene responsive element binding protein signature 27 38 IPR001471 GO:0003700|GO:0006355
Mtr1g2400 149 PRINTS Ethylene responsive element binding protein signature 50 66 IPR001471 GO:0003700|GO:0006355
Mtr1g2400 149 CDD AP2 26 85 IPR001471 GO:0003700|GO:0006355
Mtr1g2400 149 MobiDBLite consensus disorder prediction 1 27 - -
Mtr1g2400 149 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF105 13 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2400 Mtr-Chr1 34567233 34568011 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2400 24 144 AP2-EREBP Transcription Factor Family AT3G23230 57.851 1.56e-37 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mtr1g2400 AP2 5.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2400 - - gmx:100778998 141.354
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr7g2893 7 45708610 45709086 Mtr1g2400 1 34567233 34568011 PCT