Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2399 ATGGATTTTGAATCTTCATTCTTCCAATTCCAATACCAAAACCTTGACACTTCATTTGAAAATTCCTCTTCTTTTTTAGAATCCTTTTCATTGGACGATTTCTTTTTCTTCAATGAAGACAACAACATTAACAATAACACCTTTCCCATGAATTTCACTGACCAAAACACACAAATATTCAAAGAGTCATCAACCTCCGATTCCAACTCGAACACTTCAAACTCTCAAGTCAGCACGGAGTCACAAGAAGTATCATCCAATTCAACTCAATTGGTACAATCATCATCACCTAAGAGGCCATATAGAGGAGTTAGGAGAAGACCATGGGGAAAATTCGCAGCGGAAATAAGAGACTCAACTAGAAATGGTGTTAGAGTTTGGATTGGTACATTTGATACAGCTGAAGCAGCAGCTTTAGCTTATGATCAAGCAGCTTTATCAACAAGAGGATCAATGGCAGTGTTGAATTTTCCTGAACATGTTGTGAGGGAATCATTGAAAGATATGGAGAATAACAAGTCTTGGGAAAAAGATGGTTCTTCTCCTGTTTTGGCACTCAAGAGGAAACACACTTTGAAAAGAAAGTCTAAAGCAAGTAATTGCAAAAAGACCAAAAGGGTAGAAAGGGAAATGGAGAATAATAATAACATTGTTTCACAAAATGTGTTGGTGTTGGAAGATTTGGGTTCTGAATATTTGGACCAACTTCTTAGCTTGACTTCTTCTTCTCAAGACTTTTTCTAG 744 0.3669 MDFESSFFQFQYQNLDTSFENSSSFLESFSLDDFFFFNEDNNINNNTFPMNFTDQNTQIFKESSTSDSNSNTSNSQVSTESQEVSSNSTQLVQSSSPKRPYRGVRRRPWGKFAAEIRDSTRNGVRVWIGTFDTAEAAALAYDQAALSTRGSMAVLNFPEHVVRESLKDMENNKSWEKDGSSPVLALKRKHTLKRKSKASNCKKTKRVEREMENNNNIVSQNVLVLEDLGSEYLDQLLSLTSSSQDFF* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2399 247 ProSiteProfiles AP2/ERF domain profile. 100 158 IPR001471 GO:0003700|GO:0006355
Mtr1g2399 247 PANTHER DNA-BINDING DOMAIN 10 240 IPR044808 GO:0003700|GO:0009873
Mtr1g2399 247 SUPERFAMILY DNA-binding domain 101 159 IPR016177 GO:0003677
Mtr1g2399 247 PRINTS Ethylene responsive element binding protein signature 101 112 IPR001471 GO:0003700|GO:0006355
Mtr1g2399 247 PRINTS Ethylene responsive element binding protein signature 124 140 IPR001471 GO:0003700|GO:0006355
Mtr1g2399 247 SMART rav1_2 100 164 IPR001471 GO:0003700|GO:0006355
Mtr1g2399 247 MobiDBLite consensus disorder prediction 61 97 - -
Mtr1g2399 247 Pfam AP2 domain 101 150 IPR001471 GO:0003700|GO:0006355
Mtr1g2399 247 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 10 240 - -
Mtr1g2399 247 CDD AP2 101 160 IPR001471 GO:0003700|GO:0006355
Mtr1g2399 247 Gene3D AP2/ERF domain 100 160 IPR036955 GO:0003700|GO:0006355
Mtr1g2399 247 MobiDBLite consensus disorder prediction 61 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2399 Mtr-Chr1 34554697 34555740 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2399 98 237 AP2-EREBP Transcription Factor Family AT2G31230 52.830 1.44e-50 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mtr1g2399 AP2 1.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2399 K14516 - gmx:100784784 222.631
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr7g2894 7 45730575 45731863 Mtr1g2399 1 34554697 34555740 PCT