Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2398 ATGGATTTTGATTCTTCATTCTTCCAAATCCAATACCAAAACCTTGACACTTCATTTTCAAATACCTCTTCTTTTTTAGAATCCTTTTCATGGGAAGATTTCTTTAGCTTCAATGAAGACAACAACAAAACTCTTCCCTTGAACCAAAGTGCACAAATATTCAAAGAATCATCAACCTCTTATTCCAATTCCAGCACTTCAAATTCTCAAATCAGCAATGAATCACAAGAAGTTTCATCCAATTCAACACAACTAGTACAATCATCATCACCTAAGAAGTCATACAAAGGAGTTAGAAGAAGACCATGGGGAAAATTCGCAGCGGAAATAAGAGACTCAACAAGAAAAGGTGTTAGAGTTTGGATTGGTACATTTGATACAGCTGAAGCTGCTGCTTTAGCTTATGATCAAGCAGCTTTATCAACAAGAGGATCAATGGCAGTGTTGAATTTTCCTGAACATGTTGTGAGGGAATCATTGAAAGATATGGAGAATAACAAGTCTTGGGAAAAAGATGGTTCTTCTCCTGTTTTGGCACTCAAGAGGAAACACACTTTGAAAAGAAAGTCTAAAGCAAGTAATTGCAAAAAGACCAAAAGGGTAGAAAGGGAAATGGAGAATAATAATAATATTGTTTCACAAAATGTGTTGGTGTTGGAAGATTTAGGTTCTGAATATTTGGACCAACTTCTTAGTTTGAGTACTTATCAAGTCATTTGTTAG 723 0.3513 MDFDSSFFQIQYQNLDTSFSNTSSFLESFSWEDFFSFNEDNNKTLPLNQSAQIFKESSTSYSNSSTSNSQISNESQEVSSNSTQLVQSSSPKKSYKGVRRRPWGKFAAEIRDSTRKGVRVWIGTFDTAEAAALAYDQAALSTRGSMAVLNFPEHVVRESLKDMENNKSWEKDGSSPVLALKRKHTLKRKSKASNCKKTKRVEREMENNNNIVSQNVLVLEDLGSEYLDQLLSLSTYQVIC* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2398 240 Gene3D AP2/ERF domain 93 154 IPR036955 GO:0003700|GO:0006355
Mtr1g2398 240 PRINTS Ethylene responsive element binding protein signature 95 106 IPR001471 GO:0003700|GO:0006355
Mtr1g2398 240 PRINTS Ethylene responsive element binding protein signature 118 134 IPR001471 GO:0003700|GO:0006355
Mtr1g2398 240 Pfam AP2 domain 94 144 IPR001471 GO:0003700|GO:0006355
Mtr1g2398 240 SUPERFAMILY DNA-binding domain 94 153 IPR016177 GO:0003677
Mtr1g2398 240 CDD AP2 93 154 IPR001471 GO:0003700|GO:0006355
Mtr1g2398 240 MobiDBLite consensus disorder prediction 58 98 - -
Mtr1g2398 240 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 10 234 - -
Mtr1g2398 240 SMART rav1_2 94 158 IPR001471 GO:0003700|GO:0006355
Mtr1g2398 240 PANTHER DNA-BINDING DOMAIN 10 234 IPR044808 GO:0003700|GO:0009873
Mtr1g2398 240 ProSiteProfiles AP2/ERF domain profile. 94 152 IPR001471 GO:0003700|GO:0006355
Mtr1g2398 240 MobiDBLite consensus disorder prediction 58 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2398 Mtr-Chr1 34549198 34550127 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2398 65 232 AP2-EREBP Transcription Factor Family AT3G23240 52.381 1.99e-50 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Mtr1g2398 AP2 4.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2398 K14516 - gmx:100784784 261.151