Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2393 ATGCCATCTCTGCACTCGCCAGGCAAAATCCTCCGCCTGGAACTCTCCAACTTCAAATCCTACAAAGGATTCCAGCAAATCGGCCCTTTCTACGATTTCACCGCCATCATCGGCCCCAACGGCGCCGGAAAATCCAACCTCATGGATGCTATCAGCTTCGTCCTCGGCGTTCGCACCAACCAACTCCGTGGCGCTCAGTTGAAAGATCTCATCTACACTTTCGATGATCGTGAGAAAGAACACAAAGGTCGAAGAGCCTTTGTGAGATTGGTTTATCAGCTTGCGAATGAATCCGAAATCAAATTCACTAGAACTATTACTTCTGCTGGTGCTAGTGAGTATCGGATTGATGATAGTGTTGTTAATTGGGATGTCTACAATGCTAGACTCAAATCCTTGGGGATTCTCGTCAAAGCACGCAATTTCTTGGTTTTTCAGGGTGATGTGGAGTCGATTGCGTCGAAGAATCCGAAGGAGCTCACTGGGCTTATTGAGCAGATATCTGGATCTGATGAGCTTAAGAGAGATTATGAGCAATTTGAAGAAGAGAAAGCTTCTGCTGAAGAGAAATCGGCACTTGTTTATCAGAAGAAGAAGACGATGGTGATGGAGAGGAAGCAGAAGAAAGAACAGAAGGAAGAGGCGGAGAAACATATTCGCTTGCAGGATCAATTGAAATCTATGAAGAAGGAACATTTTTTGTGGCAGTTGTTCAATATAGAAAATGATGTTGTTAAAACAACCGAGGAACTTGAAGCTGATAAAAGAAGCCGTGAAGGTGTTATTAAAGAATTAGAAAATTTTGAACATGAAGCCGGCAAAAAGAAAAAAGAGCAAGCCAAGTATCTGAAAGAAGTTATGCTACGCGAGAAGAAAATAGCTGAGAAAAGCAATAGACTTGACAAGACTCAACCTGAGCTTCTGAAGTTAAAGGAGGAAATGTCTCGTATCAGTACAAAAATTAAAAAAGGGAAGAAAGAGCTTGGCAAAAAAAGGGAAGAGCAAAAGGGGCACGCCAAAGATATAGCAGACCTACAGAGTGGTATTGAGGATCTTACAGGGAAAATGAAAGACCTAAATGAAAAGGGTCGAAATGTTGGCGATCAGATTCAGTTAGATGATAATGAGTTGCAAGAATATTTTAGAATAAAAGAGGAAGCTGGGATGAAAACCGCAAAGCTTAGAGAGGAAAAAGAACTTCTAGATAGGCAGCAACATGCTGATAGTGAAGCTCAAAATAATTTGGAAGAAAATCTTCAACAATTAAAAAACCGGGAGGCTGAGCTGGATTCACAGGAAAAGCAGATGCGAGAAAGGCTTGAAAAAATTCTTGATAGTTCTGCAAAGAATAAGGATGTAGTTGAAGACTTGAATAGACAATTGCGTAAGATGAAAGAAGATCATAGTGCATCCAAGAGAAGGTATGATAACTTGAAGATAAAAATTGGCGAAATAGAAAATAAACTACGTGATCTGAAGGCGGATCGCTATGAAAACGAGAGAGATGCTAAATTGTCTCAGGCTGTGGCAACTCTGAAACGCTTGTTTCAAGGAGTCCATGGTCGCATGACTGATCTTTGTAGGCCTACACAGAAGAAGTATAACCTAGCCGTTACAGTTGCTATGGGTAAATTAATGGATGCAGTTGTTGTGGAGGATGAAAAGACCGGGAAGGAATGCATCAAGTATTTAAAAGAGCAGAGGCTTCCTCCCCAGACATTTATTCCTCTACAATCTATTCGGGTGAAGCAAATAATGGAAAGATTACGCTCATTAGGGGGTACAGCAAAACTGGTTTTCGATGTGATCCAGTTTGATCCCTCCTTGGAGAAGGCAATTCTTTTTGCTGTTGGGAATACTCTTGTTTGTGAAGACCTCGAGGAAGCCAAAATTTTAAGCTGGAGCGGGGAGAGGTTTAAAGTTGTAACCGTGGATGGAATTTTGCTGACAAAATCCGGCACAATGACTGGTGGCACTAGTGGTGGAATGGAAGCAAGGTCAAAACAGTGGGATGACAAGATACTTGAAGGATTTGTCAAAAAGAAAGAGGAGTATGAGTCGGAGTTGGAAGGGATAGGATCAATAAGAGATATGCACGTTAAAGAGTCTGAAACAGAAGGGAAAAAAAGTGGACTTGAGAAGAAAATTCAATATGCTGAGATTGAAAAGAAAAGCATTGAAGATAAACTTTCAAATTTTAGTCGTGAAAAGGGGACCATCAAAGAAGAAATTAAACGTATTAGTCCAGAACTGAAGAAGTTAAGAGATGCTGTTGAAAAGAGGAATAAAGAATTACATACTCTTGAGAAGAGGATAAATGAAATCACTGATCGGATCTACAAAGAATTCAGCAAGTCAGTTGGGGTTGCAAACATTCGCGAGTATGAAGAAAATCGACTCAAGGATGCTCAAAGTCTAGCAGAGGAGAGGCTGAAACTGAGTAGCCAACTTTCAAAATTAAAATATCAGTTGGAGTATGAACAAAATCGGGACATGAGTTCACGGATTCAAGAATTGGAATCTTTCGTAAGTGCTTTGGAGATTGATTTAAAAGGAGTACATACCAAAGAGGCTGAAGCGAAGTTAGCAGCAGAGAAAGTTACTGAAGAGATCAATCAGTTAAAAGATGAAGTTAAAGAGTGGAAATCAGAGGCAGAGGATCGTGAAAAGGAAATCCAGGAATGGAAGAAGAAGGCTTCTGCAGCCACAACAAGCTTAGCCAAACTTAATCGTTTGATTAGCTCAAAGGAGGCACAGATTGAGCAGTTGATTGGGCAAAAGCAGGAAATCGTAGAAAAGTGTGAACTAGAGCAAATTAGCCTTCCAATCATACCAGATCCCATGGATACTGATACTTCAACACCGGGTCCAGTTTTTGACTTTGATAAGCTCAGTAGAACACTAAAAGATAGGAGACAATCTGACAGGGATAAAATAGAGGTAGACTTTAAGCAAAAAATGGATGCATTGATATCTGAGATCGAAAGAACAGCACCAAATTTGAAGGCATTGGACCAGTATGAGGCTCTGCTTGGAAAAGAAAGAGCTGTAACTGAAGAGTTTGAAGCTGTCAGGAAAGAAGAGAAGGAAAAAGCCGATAGATTCAATGAAGTAAAGCAGAAGAGATATGATTTGTTCATGGATGCTTTCAACCATATCGCTGGTAATATAGATAAAATTTACAAACAACTTACAAAGAGCAACACACATCCTCTGGGTGGAACAGCATACTTAAATTTGGAAAATGAAGACGATCCATTTCTGCACGGCATGAAGTACACTGCTATGCCACCAACAAAGCGGTTCCGCGACATGGAGCAACTATCTGGTGGCGAAAAGACTGTTGCTGCACTTGCATTGCTGTTCTCCATCCACAGTTATAGGCCTTCACCATTTTTCATACTGGATGAAGTTGATGCTGCATTGGACAACTTGAATGTTGCAAAGGTTGCTGGCTTTATTCGTTCAAGATCTTGTGAAGGAGCAAGGACTAATCAGGATGCTGATGCCGGATCTGGTTTTCAGAGTATTGTAATATCTCTGAAAGACAGCTTCTATGACAAAGCTGAAGCGTTAGTTGGGGTTTACAGGGACTCTGAGAGAGGCTGTTCGAGTACTCTCTCATTTGATCTACTCAAATATCGGGAGTCCTAA 3654 0.408 MPSLHSPGKILRLELSNFKSYKGFQQIGPFYDFTAIIGPNGAGKSNLMDAISFVLGVRTNQLRGAQLKDLIYTFDDREKEHKGRRAFVRLVYQLANESEIKFTRTITSAGASEYRIDDSVVNWDVYNARLKSLGILVKARNFLVFQGDVESIASKNPKELTGLIEQISGSDELKRDYEQFEEEKASAEEKSALVYQKKKTMVMERKQKKEQKEEAEKHIRLQDQLKSMKKEHFLWQLFNIENDVVKTTEELEADKRSREGVIKELENFEHEAGKKKKEQAKYLKEVMLREKKIAEKSNRLDKTQPELLKLKEEMSRISTKIKKGKKELGKKREEQKGHAKDIADLQSGIEDLTGKMKDLNEKGRNVGDQIQLDDNELQEYFRIKEEAGMKTAKLREEKELLDRQQHADSEAQNNLEENLQQLKNREAELDSQEKQMRERLEKILDSSAKNKDVVEDLNRQLRKMKEDHSASKRRYDNLKIKIGEIENKLRDLKADRYENERDAKLSQAVATLKRLFQGVHGRMTDLCRPTQKKYNLAVTVAMGKLMDAVVVEDEKTGKECIKYLKEQRLPPQTFIPLQSIRVKQIMERLRSLGGTAKLVFDVIQFDPSLEKAILFAVGNTLVCEDLEEAKILSWSGERFKVVTVDGILLTKSGTMTGGTSGGMEARSKQWDDKILEGFVKKKEEYESELEGIGSIRDMHVKESETEGKKSGLEKKIQYAEIEKKSIEDKLSNFSREKGTIKEEIKRISPELKKLRDAVEKRNKELHTLEKRINEITDRIYKEFSKSVGVANIREYEENRLKDAQSLAEERLKLSSQLSKLKYQLEYEQNRDMSSRIQELESFVSALEIDLKGVHTKEAEAKLAAEKVTEEINQLKDEVKEWKSEAEDREKEIQEWKKKASAATTSLAKLNRLISSKEAQIEQLIGQKQEIVEKCELEQISLPIIPDPMDTDTSTPGPVFDFDKLSRTLKDRRQSDRDKIEVDFKQKMDALISEIERTAPNLKALDQYEALLGKERAVTEEFEAVRKEEKEKADRFNEVKQKRYDLFMDAFNHIAGNIDKIYKQLTKSNTHPLGGTAYLNLENEDDPFLHGMKYTAMPPTKRFRDMEQLSGGEKTVAALALLFSIHSYRPSPFFILDEVDAALDNLNVAKVAGFIRSRSCEGARTNQDADAGSGFQSIVISLKDSFYDKAEALVGVYRDSERGCSSTLSFDLLKYRES* 1218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2393 1217 CDD ABC_SMC1_euk 10 157 IPR028468 GO:0005524|GO:0007062|GO:0008278|GO:0016887
Mtr1g2393 1217 Pfam RecF/RecN/SMC N terminal domain 10 1198 IPR003395 -
Mtr1g2393 1217 CDD ABC_SMC1_euk 1096 1211 IPR028468 GO:0005524|GO:0007062|GO:0008278|GO:0016887
Mtr1g2393 1217 Coils Coil 307 327 - -
Mtr1g2393 1217 Coils Coil 857 933 - -
Mtr1g2393 1217 Gene3D - 949 1216 IPR027417 -
Mtr1g2393 1217 Gene3D - 8 232 IPR027417 -
Mtr1g2393 1217 SUPERFAMILY Smc hinge domain 481 667 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Mtr1g2393 1217 Coils Coil 405 442 - -
Mtr1g2393 1217 Coils Coil 342 362 - -
Mtr1g2393 1217 Coils Coil 447 495 - -
Mtr1g2393 1217 PIRSF SMC 8 1215 IPR024704 GO:0005524|GO:0016887
Mtr1g2393 1217 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER 9 1216 - -
Mtr1g2393 1217 Coils Coil 751 778 - -
Mtr1g2393 1217 Gene3D - 584 659 - -
Mtr1g2393 1217 Coils Coil 170 231 - -
Mtr1g2393 1217 Pfam SMC proteins Flexible Hinge Domain 517 632 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Mtr1g2393 1217 SMART SMC_hinge_2 517 633 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Mtr1g2393 1217 Gene3D - 478 583 - -
Mtr1g2393 1217 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 9 1216 - -
Mtr1g2393 1217 Coils Coil 709 736 - -
Mtr1g2393 1217 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 1160 IPR027417 -
Mtr1g2393 1217 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 272 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2393 Mtr-Chr1 34506705 34521770 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2393 6 92 Structural Maintenance of Chromosomes family AT5G07660 35.106 6.57e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2393 K06636 - gmx:100791953 1889.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g2393 1 34506705 34521770 Mtr1g2393 1 34506705 34521770 ECH