Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mtr1g2388 | ATGCATATAGGTCAAACGGATACAGCTTCAGTAACATGTCTGATCAACAGCATTTCTCGATTTGTTCATCTGGTTTCTTGCCAAACAGTGAAACCTATGCCCTTCCAGAAGATCTGCAATAATATGGTTGGGGTGTTAAAGCGTTTGAAGCCAGTACTCGATGACGCAATGGATTACAAAATTCCTTTACATCAAAATTTATGTAAAGTATGTGAAGAATTGGATATATGCGTTAACGAAGCAAGGGATTTCATTGAAAAGTGGGGTCCAAAGATGAGCAAGATTCACAGTGTTCTTCAAAGTGGTACATTGTTGATCAAGTTACAAAGCACTTCACTTGACATTTGTCACATGATAGTTAAATCCCTAGAGTCACCACCATCTGCATCGGTTTTGGCTAACCTCCAGCACTATATCCAGGAACTTCAGTGTCTCAAGAAGGAAACAGCAATGGTCTATATAGAAAAGGCACTGAGAGAGCAAAGAGAAGATAGCGAACCTTGCAAGGAAAATCTAAAGGAAATTATTGAGTTACTTAAATTGACATCAACTCAGGAGCTCTTGAATGAGACTATTGCTGTGGAAAAGGAAAGATTGAACGCTGAAAGGCAGAAAATGAAAGGCGACTTGGAAGAAATCAATGAAATTGTGAATCTTGTCCGCGTCTTACGTGATTATGTGATGAAAACCGAGTACTTTGCAGTCAAAAGTGGTGTCTCATTCCCTCCGTACTTTCGTTGTCCTTTATCATTGGAACTCATGTTGGATCCTGTTATTGTGGCTTCCGGTCAAACATACGAGAGGCAATCCATCAAAAAGTGGCTTGATCATGGGCTGACTGTTTGTCCAAAGACTCGTCAAAGACTTACTCATACAAATCTCATTCCCAATTATACTGTCAAAGCTATGATAGCAACTTGGTGTGAGGAAAATAACAACAACCGTTCTAGTAACTCTGAGCATAATACTGGAAATGCATTTGAAGAACAAAAGGGCGATAACTCTTTCAGATCCAATGGAGAATGCAATGGAGGCCAGAATATAGAATTAGAAAAGTGGGAGCTACAATCACCATATATTCACAGCAGAAGTGAATCCTTTTCAAGTTCAATTTCTAGTAGTGATTGTCTACTTGCAGTTTCAAAAGATGTATCAAGGGTGTCCGATAAGTATCAAATTACGAATGTATTGTCCGTAGAAGCGGGAGGGACAGAAAATGGAAAAAATAATAACAGTAATACTCCTAATAGTCATTCAAGAGTTGATTCACATCCTGTTTCAAACTCGGGATTGAATGAATTGACCACCTCGTCTCATGTCAATAAATTGATTGAAGATCTCCAAAACGAATCAATTGAAGTGAAAAGTACTGCTGCAGAAGAACTGAGGCTCCTTACAAAGCATAACACGGAAAACCGTATCATTGTAGGGCAGTGTGGGGCTGTCATGCCTTTACTTTCGCTACTATATTCAAACGGGAAAGGAACACAAGAGCATGCTGTAACAGCTCTGCTTAATTTATCAATTAATGAAGACAACAAGCCCTTGATTATGGAAGCGGGGGCTATAGAACCCCTTATCCATGTTTTAAAGACAGGAAATGATGGTGCCAAGGAGAATTCTGCGGCAGCTCTATTCAGCCTCTCTGTAATGGAGAACGGTAAAGCAAAAATCGGCCGTTCCGGTGCAATTAAAGCATTGGCGGAACTTCTTGCCTCAGGAACACTTAGAGGAAAGAAGGATGCTGCTACTGCTTTATATAACCTCTCAATATTTCATGAGAATAAAGCTCGAATAGTTCAAGCTGGAGCTGTGAAATTTCTGGTTGAGTTAACGGATCCTGCCGATGGAATGGCTGACAAGGCTGTTGCCCTTCTGTCAAACCTGTCGACAATTGCGGAGGGAAGGCTAGAAATCGCAAGAGAAGGTGGCATCCCGTCATTAGTTGAAATTGTTGAATCAGGTTCTCAGAGGGGAAAGGAAAATGCTGCTTCCATTCTCTTACAATTATGCCTTCATAGTTCCAGGTTTTGTACACTGGTTTTACAAGAAGGAGCTGTACCTCCCTTAGTTGCATTATCTCAATCTGGTACTCCAAGAGCAAAGGAAAAGGCACAACAACTTCTCAGTCATTTTCGTAATCAACGGGAAGCAGCTACGACAAAGGGAAAATCATGA | 2178 | 0.4059 | MHIGQTDTASVTCLINSISRFVHLVSCQTVKPMPFQKICNNMVGVLKRLKPVLDDAMDYKIPLHQNLCKVCEELDICVNEARDFIEKWGPKMSKIHSVLQSGTLLIKLQSTSLDICHMIVKSLESPPSASVLANLQHYIQELQCLKKETAMVYIEKALREQREDSEPCKENLKEIIELLKLTSTQELLNETIAVEKERLNAERQKMKGDLEEINEIVNLVRVLRDYVMKTEYFAVKSGVSFPPYFRCPLSLELMLDPVIVASGQTYERQSIKKWLDHGLTVCPKTRQRLTHTNLIPNYTVKAMIATWCEENNNNRSSNSEHNTGNAFEEQKGDNSFRSNGECNGGQNIELEKWELQSPYIHSRSESFSSSISSSDCLLAVSKDVSRVSDKYQITNVLSVEAGGTENGKNNNSNTPNSHSRVDSHPVSNSGLNELTTSSHVNKLIEDLQNESIEVKSTAAEELRLLTKHNTENRIIVGQCGAVMPLLSLLYSNGKGTQEHAVTALLNLSINEDNKPLIMEAGAIEPLIHVLKTGNDGAKENSAAALFSLSVMENGKAKIGRSGAIKALAELLASGTLRGKKDAATALYNLSIFHENKARIVQAGAVKFLVELTDPADGMADKAVALLSNLSTIAEGRLEIAREGGIPSLVEIVESGSQRGKENAASILLQLCLHSSRFCTLVLQEGAVPPLVALSQSGTPRAKEKAQQLLSHFRNQREAATTKGKS* | 726 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mtr1g2388 | 725 | MobiDBLite | consensus disorder prediction | 313 | 341 | - | - | |
Mtr1g2388 | 725 | Pfam | U-box domain | 242 | 312 | IPR003613 | GO:0004842|GO:0016567 | |
Mtr1g2388 | 725 | Pfam | Armadillo/beta-catenin-like repeat | 510 | 549 | IPR000225 | GO:0005515 | |
Mtr1g2388 | 725 | Pfam | Armadillo/beta-catenin-like repeat | 469 | 508 | IPR000225 | GO:0005515 | |
Mtr1g2388 | 725 | Pfam | Armadillo/beta-catenin-like repeat | 555 | 590 | IPR000225 | GO:0005515 | |
Mtr1g2388 | 725 | Gene3D | - | 423 | 575 | IPR011989 | - | |
Mtr1g2388 | 725 | ProSiteProfiles | U-box domain profile. | 240 | 314 | IPR003613 | GO:0004842|GO:0016567 | |
Mtr1g2388 | 725 | MobiDBLite | consensus disorder prediction | 401 | 434 | - | - | |
Mtr1g2388 | 725 | SMART | Ubox_2 | 244 | 307 | IPR003613 | GO:0004842|GO:0016567 | |
Mtr1g2388 | 725 | Gene3D | - | 576 | 724 | IPR011989 | - | |
Mtr1g2388 | 725 | Coils | Coil | 196 | 216 | - | - | |
Mtr1g2388 | 725 | PANTHER | U-BOX DOMAIN-CONTAINING PROTEIN 3 | 400 | 720 | - | - | |
Mtr1g2388 | 725 | PANTHER | U-BOX DOMAIN-CONTAINING PROTEIN 3 | 11 | 330 | - | - | |
Mtr1g2388 | 725 | SUPERFAMILY | ARM repeat | 431 | 712 | IPR016024 | - | |
Mtr1g2388 | 725 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 521 | 563 | IPR000225 | GO:0005515 | |
Mtr1g2388 | 725 | SMART | arm_5 | 592 | 631 | IPR000225 | GO:0005515 | |
Mtr1g2388 | 725 | SMART | arm_5 | 632 | 672 | IPR000225 | GO:0005515 | |
Mtr1g2388 | 725 | SMART | arm_5 | 551 | 591 | IPR000225 | GO:0005515 | |
Mtr1g2388 | 725 | SMART | arm_5 | 510 | 550 | IPR000225 | GO:0005515 | |
Mtr1g2388 | 725 | SMART | arm_5 | 469 | 509 | IPR000225 | GO:0005515 | |
Mtr1g2388 | 725 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 232 | 325 | IPR013083 | - | |
Mtr1g2388 | 725 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 603 | 644 | IPR000225 | GO:0005515 | |
Mtr1g2388 | 725 | PANTHER | U BOX DOMAIN-CONTAINING | 11 | 330 | - | - | |
Mtr1g2388 | 725 | PANTHER | U BOX DOMAIN-CONTAINING | 400 | 720 | - | - | |
Mtr1g2388 | 725 | Coils | Coil | 702 | 722 | - | - | |
Mtr1g2388 | 725 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 480 | 522 | IPR000225 | GO:0005515 | |
Mtr1g2388 | 725 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 562 | 604 | IPR000225 | GO:0005515 | |
Mtr1g2388 | 725 | SUPERFAMILY | RING/U-box | 239 | 314 | - | - | |
Mtr1g2388 | 725 | CDD | RING-Ubox_PUB | 245 | 287 | IPR045210 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Mtr1g2388 | Mtr-Chr1 | 34448849 | 34454512 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Mtr1g2388 | 7 | 725 | U-box Gene Family | AT3G54790 | 52.418 | 0.0 | 704 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mtr1g2388 | - | - | mtr:MTR_1g069845 | 1366.29 |