Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2388 ATGCATATAGGTCAAACGGATACAGCTTCAGTAACATGTCTGATCAACAGCATTTCTCGATTTGTTCATCTGGTTTCTTGCCAAACAGTGAAACCTATGCCCTTCCAGAAGATCTGCAATAATATGGTTGGGGTGTTAAAGCGTTTGAAGCCAGTACTCGATGACGCAATGGATTACAAAATTCCTTTACATCAAAATTTATGTAAAGTATGTGAAGAATTGGATATATGCGTTAACGAAGCAAGGGATTTCATTGAAAAGTGGGGTCCAAAGATGAGCAAGATTCACAGTGTTCTTCAAAGTGGTACATTGTTGATCAAGTTACAAAGCACTTCACTTGACATTTGTCACATGATAGTTAAATCCCTAGAGTCACCACCATCTGCATCGGTTTTGGCTAACCTCCAGCACTATATCCAGGAACTTCAGTGTCTCAAGAAGGAAACAGCAATGGTCTATATAGAAAAGGCACTGAGAGAGCAAAGAGAAGATAGCGAACCTTGCAAGGAAAATCTAAAGGAAATTATTGAGTTACTTAAATTGACATCAACTCAGGAGCTCTTGAATGAGACTATTGCTGTGGAAAAGGAAAGATTGAACGCTGAAAGGCAGAAAATGAAAGGCGACTTGGAAGAAATCAATGAAATTGTGAATCTTGTCCGCGTCTTACGTGATTATGTGATGAAAACCGAGTACTTTGCAGTCAAAAGTGGTGTCTCATTCCCTCCGTACTTTCGTTGTCCTTTATCATTGGAACTCATGTTGGATCCTGTTATTGTGGCTTCCGGTCAAACATACGAGAGGCAATCCATCAAAAAGTGGCTTGATCATGGGCTGACTGTTTGTCCAAAGACTCGTCAAAGACTTACTCATACAAATCTCATTCCCAATTATACTGTCAAAGCTATGATAGCAACTTGGTGTGAGGAAAATAACAACAACCGTTCTAGTAACTCTGAGCATAATACTGGAAATGCATTTGAAGAACAAAAGGGCGATAACTCTTTCAGATCCAATGGAGAATGCAATGGAGGCCAGAATATAGAATTAGAAAAGTGGGAGCTACAATCACCATATATTCACAGCAGAAGTGAATCCTTTTCAAGTTCAATTTCTAGTAGTGATTGTCTACTTGCAGTTTCAAAAGATGTATCAAGGGTGTCCGATAAGTATCAAATTACGAATGTATTGTCCGTAGAAGCGGGAGGGACAGAAAATGGAAAAAATAATAACAGTAATACTCCTAATAGTCATTCAAGAGTTGATTCACATCCTGTTTCAAACTCGGGATTGAATGAATTGACCACCTCGTCTCATGTCAATAAATTGATTGAAGATCTCCAAAACGAATCAATTGAAGTGAAAAGTACTGCTGCAGAAGAACTGAGGCTCCTTACAAAGCATAACACGGAAAACCGTATCATTGTAGGGCAGTGTGGGGCTGTCATGCCTTTACTTTCGCTACTATATTCAAACGGGAAAGGAACACAAGAGCATGCTGTAACAGCTCTGCTTAATTTATCAATTAATGAAGACAACAAGCCCTTGATTATGGAAGCGGGGGCTATAGAACCCCTTATCCATGTTTTAAAGACAGGAAATGATGGTGCCAAGGAGAATTCTGCGGCAGCTCTATTCAGCCTCTCTGTAATGGAGAACGGTAAAGCAAAAATCGGCCGTTCCGGTGCAATTAAAGCATTGGCGGAACTTCTTGCCTCAGGAACACTTAGAGGAAAGAAGGATGCTGCTACTGCTTTATATAACCTCTCAATATTTCATGAGAATAAAGCTCGAATAGTTCAAGCTGGAGCTGTGAAATTTCTGGTTGAGTTAACGGATCCTGCCGATGGAATGGCTGACAAGGCTGTTGCCCTTCTGTCAAACCTGTCGACAATTGCGGAGGGAAGGCTAGAAATCGCAAGAGAAGGTGGCATCCCGTCATTAGTTGAAATTGTTGAATCAGGTTCTCAGAGGGGAAAGGAAAATGCTGCTTCCATTCTCTTACAATTATGCCTTCATAGTTCCAGGTTTTGTACACTGGTTTTACAAGAAGGAGCTGTACCTCCCTTAGTTGCATTATCTCAATCTGGTACTCCAAGAGCAAAGGAAAAGGCACAACAACTTCTCAGTCATTTTCGTAATCAACGGGAAGCAGCTACGACAAAGGGAAAATCATGA 2178 0.4059 MHIGQTDTASVTCLINSISRFVHLVSCQTVKPMPFQKICNNMVGVLKRLKPVLDDAMDYKIPLHQNLCKVCEELDICVNEARDFIEKWGPKMSKIHSVLQSGTLLIKLQSTSLDICHMIVKSLESPPSASVLANLQHYIQELQCLKKETAMVYIEKALREQREDSEPCKENLKEIIELLKLTSTQELLNETIAVEKERLNAERQKMKGDLEEINEIVNLVRVLRDYVMKTEYFAVKSGVSFPPYFRCPLSLELMLDPVIVASGQTYERQSIKKWLDHGLTVCPKTRQRLTHTNLIPNYTVKAMIATWCEENNNNRSSNSEHNTGNAFEEQKGDNSFRSNGECNGGQNIELEKWELQSPYIHSRSESFSSSISSSDCLLAVSKDVSRVSDKYQITNVLSVEAGGTENGKNNNSNTPNSHSRVDSHPVSNSGLNELTTSSHVNKLIEDLQNESIEVKSTAAEELRLLTKHNTENRIIVGQCGAVMPLLSLLYSNGKGTQEHAVTALLNLSINEDNKPLIMEAGAIEPLIHVLKTGNDGAKENSAAALFSLSVMENGKAKIGRSGAIKALAELLASGTLRGKKDAATALYNLSIFHENKARIVQAGAVKFLVELTDPADGMADKAVALLSNLSTIAEGRLEIAREGGIPSLVEIVESGSQRGKENAASILLQLCLHSSRFCTLVLQEGAVPPLVALSQSGTPRAKEKAQQLLSHFRNQREAATTKGKS* 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2388 725 MobiDBLite consensus disorder prediction 313 341 - -
Mtr1g2388 725 Pfam U-box domain 242 312 IPR003613 GO:0004842|GO:0016567
Mtr1g2388 725 Pfam Armadillo/beta-catenin-like repeat 510 549 IPR000225 GO:0005515
Mtr1g2388 725 Pfam Armadillo/beta-catenin-like repeat 469 508 IPR000225 GO:0005515
Mtr1g2388 725 Pfam Armadillo/beta-catenin-like repeat 555 590 IPR000225 GO:0005515
Mtr1g2388 725 Gene3D - 423 575 IPR011989 -
Mtr1g2388 725 ProSiteProfiles U-box domain profile. 240 314 IPR003613 GO:0004842|GO:0016567
Mtr1g2388 725 MobiDBLite consensus disorder prediction 401 434 - -
Mtr1g2388 725 SMART Ubox_2 244 307 IPR003613 GO:0004842|GO:0016567
Mtr1g2388 725 Gene3D - 576 724 IPR011989 -
Mtr1g2388 725 Coils Coil 196 216 - -
Mtr1g2388 725 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 3 400 720 - -
Mtr1g2388 725 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 3 11 330 - -
Mtr1g2388 725 SUPERFAMILY ARM repeat 431 712 IPR016024 -
Mtr1g2388 725 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 521 563 IPR000225 GO:0005515
Mtr1g2388 725 SMART arm_5 592 631 IPR000225 GO:0005515
Mtr1g2388 725 SMART arm_5 632 672 IPR000225 GO:0005515
Mtr1g2388 725 SMART arm_5 551 591 IPR000225 GO:0005515
Mtr1g2388 725 SMART arm_5 510 550 IPR000225 GO:0005515
Mtr1g2388 725 SMART arm_5 469 509 IPR000225 GO:0005515
Mtr1g2388 725 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 232 325 IPR013083 -
Mtr1g2388 725 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 603 644 IPR000225 GO:0005515
Mtr1g2388 725 PANTHER U BOX DOMAIN-CONTAINING 11 330 - -
Mtr1g2388 725 PANTHER U BOX DOMAIN-CONTAINING 400 720 - -
Mtr1g2388 725 Coils Coil 702 722 - -
Mtr1g2388 725 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 480 522 IPR000225 GO:0005515
Mtr1g2388 725 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 562 604 IPR000225 GO:0005515
Mtr1g2388 725 SUPERFAMILY RING/U-box 239 314 - -
Mtr1g2388 725 CDD RING-Ubox_PUB 245 287 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2388 Mtr-Chr1 34448849 34454512 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2388 7 725 U-box Gene Family AT3G54790 52.418 0.0 704
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2388 - - mtr:MTR_1g069845 1366.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g2388 1 34448849 34454512 Mtr1g2388 1 34448849 34454512 ECH