Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2386 ATGGGTCTTAGAGATGTCGGTGCTTCACTTCCCCCTGGCTTTCGATTTTACCCCAGTGATGAAGAGTTGGTCCTTCATTACCTTTACAAAAAAATCACTAATGAGGATGTTCTTAAGGGTACCTTGGAGGAAATTGACTTGCATACTTGCGAGCCTTGGCAACTTCCTGAGGTGGCTAAACTCAACGCAACTGAATGGTACTTCTTTAGCTTTCGTGACCGTAAATATGCCACAGGTTTTAGAACCAATAGGGCTACGACATCTGGATATTGGAAAGCAACAGGAAAGGATCGAACGGTGTTCGATCCAATCACACATGAGGTTGTAGGAATGAGGAAAACTCTAGTGTTCTATAGGAATAGAGCTCCAAATGGAATCAAAACAGGTTGGATCATGCATGAGTTTAGGTTGGAAACCCCACATATGCCACCTAAGGAAGACTGGGTTTTGTGTAGAGTATTTCATAAAGGCAAGACAGAAAATAATGCCAAATTAAGTCCACAAGAAATGTATGAGACTATAGTCCCATCCCTAACCAACCAAACCATGCCAATTGGGTATAACCAATTTGCTTCATTCTCATCTTCAATGACAACCCATCATTGTCATTTAAATGAGAACCAAAATAATTCTTTGATGAATCTTCTTCAATTTTCTAAAGAAACAAACAACAATTGTAGTAGTGTTACTCAAATTAGTCCTAAATGTGATGATGGATATGGATATTTGTGGGACATGGATTTGGAAGATCATCATGATGGTGTGGCCTCATCAGACATGGAAGGAATGAGATTCCAGGTTGATAATAATAGCATGGTCTTGTTATAA 828 0.3937 MGLRDVGASLPPGFRFYPSDEELVLHYLYKKITNEDVLKGTLEEIDLHTCEPWQLPEVAKLNATEWYFFSFRDRKYATGFRTNRATTSGYWKATGKDRTVFDPITHEVVGMRKTLVFYRNRAPNGIKTGWIMHEFRLETPHMPPKEDWVLCRVFHKGKTENNAKLSPQEMYETIVPSLTNQTMPIGYNQFASFSSSMTTHHCHLNENQNNSLMNLLQFSKETNNNCSSVTQISPKCDDGYGYLWDMDLEDHHDGVASSDMEGMRFQVDNNSMVLL* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2386 275 Pfam No apical meristem (NAM) protein 11 137 IPR003441 GO:0003677|GO:0006355
Mtr1g2386 275 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 270 - -
Mtr1g2386 275 SUPERFAMILY NAC domain 8 156 IPR036093 GO:0003677|GO:0006355
Mtr1g2386 275 Gene3D NAC domain 19 161 IPR036093 GO:0003677|GO:0006355
Mtr1g2386 275 ProSiteProfiles NAC domain profile. 10 156 IPR003441 GO:0003677|GO:0006355
Mtr1g2386 275 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2386 Mtr-Chr1 34406210 34410339 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2386 9 165 NAC Transcription Factor Family AT1G76420 57.500 2.18e-63 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Mtr1g2386 NAM 1.8e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2386 - - ccaj:109788642 474.167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g2386 1 34406210 34410339 Mtr1g2386 1 34406210 34410339 ECH
Mtr7g2913 7 45883089 45887979 Mtr1g2386 1 34406210 34410339 PCT