Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2381 ATGGAAGAAGAACAGGATCGAATTTTGCTTTCTACTTTAGGCGTTCAATCTGCCAATCCTGAAGACATCGAACGCCACATTTTCGATACGGCTAGGAATGATTCAGTGAATGTTACAGAAGATAAAGGGAATAATGTTGAAAATGAATGTGAACGTTTACCTGAAAACGTTGATCCGTTGTCGAAAGCTAAAGCTGAACTTCATCAGAAGTTAAGAGCAATAGAATTTGAAATCGGTGCAGTTTCTTCGACAATTGAAAGGCCGAGAGATGTTGTTAAAAGTGAAGAATGTGAGGAGAATGAGAATTTGGAGGAAGGGATTGATGAGGGTGGTGGTTCGGAACTTCAACGTGTTCTTGCTGCCGATAGGTTGAGGAGTTTGAAGAAAACGAAGGCTCAATTGGAGAAAGAGCTGAAAAGTTTGTCGAAGGATTGTGATTTGAAAAGTACTGAGAGTAAAAAAGTTATCTTTAGTTTAGTTAAGGAAGATAGAAAACCAAAGAAGAAGCTTATAGATGATAAGAAAGTAAGCAAAAGACCTGCAAAGCGGTTTAAGACAGTCTCATTTGACGACGATGATGATTTTGATGCTGTTCTCGATGCAGCATCTGCAGGATTCGTAGAAACTGAAAGGGATGAATTGGTTAGAAAAGGAATGTTCACCCCTTTTCATAAGTTGAAGGGGTTTGAGCGCGGCATTCAACAACCCGAAGCATCAACCAGTCGTAATGCAGTTGAGCAAGAAAATACCAACGATCTTGCTTATTCCAGTGTTGAAAGAGCCGCCAGATCATTTTCTCAGGCAGCAAAAGTTCGCCCAACCTCCAAGCTGCTTAGGCCTGAAGAGGTACCAAAGCTTGATGCACCCACTATTCCTTTTCGCAGGCTCAAGAAACCAATGCAATTACCCAAACCTCTAGACGACAATGAGGGGGATCTGAATACAGATTCAAAAAGGAAAAAGAAGCGACCTGGGCCTGGTAGGAAATGGACCAAGCGTGTTTCTTCCGAGGATAGACAACTGGGTGAAAGTGAAAATGCTAATGGTTGCTTGGACAATTCCAGTTGTGAAAGTTTAGAAGAAGCAAATGATGTTGAACTTTCTGAACATGAATCTTCGTATGTAACATTAGAAGGTGGGTTGAAAATCCCTGATAACATATTTGAAGCTCTGTTTGACTATCAAAAGGTTGGTGTTCAATGGATGTGGGAGTTGCACTGCCAAAGAGCTGGTGGAATTATTGGTGATGAGATGGGTCTTGGTAAAACTATACAAGTATTGTCATTTCTGGGTGCTTTGCATTTTAGTGGCATGTACAAACCCAGCATTATTGTCTGTCCTGTTACACTCCTGCGACAATGGAAAAGGGAAGCTAAAAAGTGGTATCCTAAATTCCATGTTGAACTTTTACACGATTCTGCTCAGGATCTGGCTTCTAAAAAGAAGCGAGCTGAATCCGATGGAACAGACTCTGAAAGCAATAGTTCAAGCGACAATGATTATGAGAAAAGTGTACCGTCTAAAAATACAAGAAAATGGGAAACCCTGATAAATCGTGTCATGAGATCAGAATCTGGATTACTCATCACCACTTATGAGCAGCTAAGGATACTTGGAGACCAGTTGCTTAACATTGAATGGGGTTATGCAGTTCTTGACGAAGGGCATAAAATTAGGAATCCAAACGCAGAAGTTACCCTCGCTTGCAAACAGCTACAAACTGTACACCGCATAATAATGACTGGTGCACCTATTCAGAACAAACTGAGTGAGTTATGGTCGTTGTTTGATTTTGTTTTCCCTGGAAAATTGGGTGTTTTGCCTGTGTTTGAAGCCGAGTTTGCAGTTCCTATAAGAGTTGGTGGATATTCAAATGCTTCTCCATTACAAGTATCCACAGCATACAGGTGTGCGGTGGTGCTGCGTGATTTAATTATGCCTTATCTTCTCCGACGAATGAAGGCTGATGTAAATGCTCAGCTTCCAAAGAAAACTGAGCACGTTCTGTTTTGCAGTCTTACATCAGAGCAAGTATCTGCTTATAGAGCATTTTTAGCAAGCACTGAGGTGGAGGAAATATTGGATGGAGGCAGGAATTCACTTTATGGAATTGATGTGATGCGTAAGATCTGCAATCACCCAGACCTACTTGAAAGGGAACAGGCCTCCAGCAATCCAGATTATGGAAATCCTGAACGTAGTGGGAAAATGAAAGTTGTAGCTCAAGTGCTTAATGTTTGGAAGGAGCAGGGCCACCGTGTTCTTCTTTTTACTCAAACCCAACAAATGCTTGACATTTTTGAGAAATATTTGACTACTTTTGGACATATTTACCGGAGAATGGATGGTCTCACTCCTGTAAAACAGAGAATGGCTTTAATGGACGAGTTTAATGCCTCCAGCGAGATTTTTGTTTTCATTTTAACAACCAAAGTTGGGGGGTTGGGGACAAATCTTACTGGTGCAGATAGAGTGATCATCTTTGACCCTGATTGGAATCCTTCGACTGATATGCAGGCTAGAGAGCGTGCATGGCGAATTGGTCAGAAACGGGATGTAACAATATATAGGTTAATCACACGTGGAACTATAGAGGAGAAAGTATATCATCGTCAGATTTACAAACATTTTCTTACGAATAAGATATTGAAGAACCCACAACAGAAAAGGTTCTTTAAGGCCCGAGATATGAAGGATCTTTTTGTTTTGAATGTGGATGGAGAAACTGGGTCAACAGAAACGGCAAATATTTTCAGTCAAATATCAGAAGATGTAAATATTATTGGGGCACATCAAGAAAATCAGGATAATAATGAATATAGTCAAACTGCTGAACTGGCTTCTGAAGATGATGCAGTTGGAGATGATGGCAAATCATGCAGAACATCTTCAAGAGGAAAAGGGAAAGAGAAGGTTGACAAAAGTAATGGGGTTGATGAAGAAGCAAATGTATTGAAAAGTCTTTTTGATGCTAATGGGATACATAGTGCCATGAACCATGATTTGATCATGGATGCCCATGATGAGGAGAAGATGAGACTTGACGAGGAAGCTTCCAAGGTTGCACAAAGAGCTGCAGAAGCTTTACGTCAGTCAAGAATGATCCGAAACCATGAAAGCGTCTCAGTTCCTACATGGACAGGAAGGTCAGGAGCTGCTGGTGCACCATCATCTGTTCGGCGGAAGTTTGGTTCAACTGTGAAACCCCAGTTGCTAAACAATAGCAAAGCATCTGATGAATCACCAAGCAGGGGATCTAACAAATTCAATGGATATGCTGCTGGGGCTTCTTCTGGTAAGGCATTATCTTCTGCTGACATATTATCCAAAATTCGAGGTAATCAAGAAAAAGCCATCAGTGCCGGGCTTGAGCATCAGTTTGGTCAGTCAAGGTCTGTAGATGTTAGAACTTCCAAGGCTCCTGAAAATTCATCTGGATTCCAACCTGAAGTAATGATTCGGAAAATCTGCACCTTTTTTCAACAGAAAGGTGGCAGTTGTAGTTCAGACAGCATAGTTCAGCATTTCAAGGACAGGATTCCCTCAAAAGATCTTCCCCTGTTCAAGAATATGTTAAAGGAAATAGCGACTCTGCATAAAGGGTCAAATGGTACCCATTGGGTTCTGAAGCCAGACTATCAAGTATAA 3648 0.4112 MEEEQDRILLSTLGVQSANPEDIERHIFDTARNDSVNVTEDKGNNVENECERLPENVDPLSKAKAELHQKLRAIEFEIGAVSSTIERPRDVVKSEECEENENLEEGIDEGGGSELQRVLAADRLRSLKKTKAQLEKELKSLSKDCDLKSTESKKVIFSLVKEDRKPKKKLIDDKKVSKRPAKRFKTVSFDDDDDFDAVLDAASAGFVETERDELVRKGMFTPFHKLKGFERGIQQPEASTSRNAVEQENTNDLAYSSVERAARSFSQAAKVRPTSKLLRPEEVPKLDAPTIPFRRLKKPMQLPKPLDDNEGDLNTDSKRKKKRPGPGRKWTKRVSSEDRQLGESENANGCLDNSSCESLEEANDVELSEHESSYVTLEGGLKIPDNIFEALFDYQKVGVQWMWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSGMYKPSIIVCPVTLLRQWKREAKKWYPKFHVELLHDSAQDLASKKKRAESDGTDSESNSSSDNDYEKSVPSKNTRKWETLINRVMRSESGLLITTYEQLRILGDQLLNIEWGYAVLDEGHKIRNPNAEVTLACKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPIRVGGYSNASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTSEQVSAYRAFLASTEVEEILDGGRNSLYGIDVMRKICNHPDLLEREQASSNPDYGNPERSGKMKVVAQVLNVWKEQGHRVLLFTQTQQMLDIFEKYLTTFGHIYRRMDGLTPVKQRMALMDEFNASSEIFVFILTTKVGGLGTNLTGADRVIIFDPDWNPSTDMQARERAWRIGQKRDVTIYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQKRFFKARDMKDLFVLNVDGETGSTETANIFSQISEDVNIIGAHQENQDNNEYSQTAELASEDDAVGDDGKSCRTSSRGKGKEKVDKSNGVDEEANVLKSLFDANGIHSAMNHDLIMDAHDEEKMRLDEEASKVAQRAAEALRQSRMIRNHESVSVPTWTGRSGAAGAPSSVRRKFGSTVKPQLLNNSKASDESPSRGSNKFNGYAAGASSGKALSSADILSKIRGNQEKAISAGLEHQFGQSRSVDVRTSKAPENSSGFQPEVMIRKICTFFQQKGGSCSSDSIVQHFKDRIPSKDLPLFKNMLKEIATLHKGSNGTHWVLKPDYQV* 1216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2381 1215 MobiDBLite consensus disorder prediction 1043 1097 - -
Mtr1g2381 1215 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 654 907 IPR027417 -
Mtr1g2381 1215 MobiDBLite consensus disorder prediction 300 320 - -
Mtr1g2381 1215 MobiDBLite consensus disorder prediction 951 978 - -
Mtr1g2381 1215 Coils Coil 117 151 - -
Mtr1g2381 1215 CDD DEXHc_ERCC6 391 601 - -
Mtr1g2381 1215 MobiDBLite consensus disorder prediction 939 978 - -
Mtr1g2381 1215 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-6-RELATED 247 1120 - -
Mtr1g2381 1215 SMART ultradead3 387 619 IPR014001 -
Mtr1g2381 1215 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 403 602 IPR014001 -
Mtr1g2381 1215 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 375 652 IPR027417 -
Mtr1g2381 1215 Gene3D - 360 651 IPR038718 -
Mtr1g2381 1215 MobiDBLite consensus disorder prediction 341 355 - -
Mtr1g2381 1215 Coils Coil 1004 1031 - -
Mtr1g2381 1215 MobiDBLite consensus disorder prediction 289 355 - -
Mtr1g2381 1215 Pfam Helicase conserved C-terminal domain 741 848 IPR001650 -
Mtr1g2381 1215 Gene3D - 658 948 IPR027417 -
Mtr1g2381 1215 PANTHER SNF2/RAD54 FAMILY MEMBER 247 1120 - -
Mtr1g2381 1215 MobiDBLite consensus disorder prediction 480 506 - -
Mtr1g2381 1215 MobiDBLite consensus disorder prediction 90 111 - -
Mtr1g2381 1215 Pfam SNF2-related domain 394 716 IPR000330 GO:0005524|GO:0140658
Mtr1g2381 1215 SMART helicmild6 765 848 IPR001650 -
Mtr1g2381 1215 CDD SF2_C_SNF 734 859 - -
Mtr1g2381 1215 MobiDBLite consensus disorder prediction 1063 1093 - -
Mtr1g2381 1215 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 739 898 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2381 Mtr-Chr1 34346632 34353104 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2381 734 901 RAD5 or RAD16-like Gene Family AT5G22750 32.738 1.85e-22 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mtr1g2381 SNF2_N 4.4e-61 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2381 K10841 - gmx:100820025 1867.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g2381 1 34346632 34353104 Mtr1g2381 1 34346632 34353104 ECH