Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2379 ATGGATTCTGCGAGGAGTTGGCTTTCGAAGTTGCAGCCTCGTGATAAAATGAAGGCGAAGAAGAGGGACGAGGATGGTAATAATGATGGAAATGGAGATTTGACTTCACCTGTGGATGATGGGTCGCTTTCTGATGTCACGAAGCAGAAAGTTGCGGCCGCAAAGCAGTATATCGAAAATCATTACAAGGAGCAAATGAAGAATCTTCAGGAGAGGAAAGAGCGTCGAACCATCTTGGAAAAGAAGTTGGCCGATGCCGAGGTCTCCGAAGAAGATCAAAACAACTTACTTAAATTTTTAGAGAAAAAGGAAACCGAATATATGCGCCTTCAGAGAGCCAAGATGGGTGTTGATGATTTTGAGTTATTGACTATGATTGGAAAAGGTGCATTTGGGGAGGTCAGAGTTTGCAGAGAGAAGACTACTGATTCTGTATACGCAATGAAAAAACTAAAGAAATCAGAGATGCTTCGCAGAGGACAGGTTGAACATGTCAAAGCGGAAAGGAATCTCCTCGCAGAGGTTGACAGCAATTGCATTGTCAAACTTTATTGCTCTTTCCAGGATGACGAGTATCTTTATCTTATTATGGAGTATCTACCGGGTGGAGATATGATGACTCTACTTATGAGAAAGGATACCTTGACTGAAGATGAAGCCAGATTTTATGTAGGAGAAACTGTTCTGGCTATTGAATCTATACACAAGCACAATTATATACATAGGGATATCAAGCCTGACAACTTATTACTTGATAGATATGGACACCTGAGACTGTCTGACTTTGGACTTTGTAAACCATTAGATTGTAGTACGCTTGAAGAAAAGGATTTCTCTGTGGGTCAGAATGTGAATGGATCTACACAGAATGAGGAGCGTTCAGCTCCAAAACGCACACAACAAGAACAACTGCAAAACTGGCAAAAGAACAGGAGGACGCTTGCTTATTCCACTGTTGGTACACCGGATTATATTGCGCCAGAAGTTCTTTTGAAGAAAGGGTATGGGATGGAATGTGATTGGTGGTCACTCGGTGCTATCATGTATGAAATGTTGGTGGGATATCCACCTTTTTATTCTGATGATCCAATGACAACATGTAGGAAGATAGTGAACTGGAAATCTCACTTGAAATTTCCTGAGGAAGCTGGGCTATCGCCTGAGGCTAAAGATCTTATTAGTAGACTTTTATGTAATGTCAACCATAGGCTGGGATCAAAAGGTGCTGATGAAATAAAGGCTCATCGGTTCTTCAAAGGTGTTGAATGGGATAAACTATATCAAATTGAAGCTGCATTTATACCTGAGGTCAATGATGAATTAGATACTCAGAATTTTGAAAAGTTTGATGAGGCTGACAGCCAAACTCGACCGTCGTCAAAAACTGGTCCATGGAGGAAGATGCTTTCATCTAAAGACTTAAATTTTGTTGGATACACATACAAGAACTTTGAAATTGTTAACGATTATCAAGTTCCTGGGATGGCTGAGCTGAAGAAGAAGCCCTCCAAATCAAAGAGACCATCCATCAAGTCGCTTTTCGATTCCGAGTCAGAGACGTCAGAGTTGTCTGAGGTTTCTGATACGTCTGCAAGTGATCGACCTCAAGGAAGCTTTTTGAATCTTTTGCCACCCAAGTTAGAGGCATCTCATAGTGAGAGGAATCTTACTCATAAGTCTTAA 1683 0.4106 MDSARSWLSKLQPRDKMKAKKRDEDGNNDGNGDLTSPVDDGSLSDVTKQKVAAAKQYIENHYKEQMKNLQERKERRTILEKKLADAEVSEEDQNNLLKFLEKKETEYMRLQRAKMGVDDFELLTMIGKGAFGEVRVCREKTTDSVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSNCIVKLYCSFQDDEYLYLIMEYLPGGDMMTLLMRKDTLTEDEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLDRYGHLRLSDFGLCKPLDCSTLEEKDFSVGQNVNGSTQNEERSAPKRTQQEQLQNWQKNRRTLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPMTTCRKIVNWKSHLKFPEEAGLSPEAKDLISRLLCNVNHRLGSKGADEIKAHRFFKGVEWDKLYQIEAAFIPEVNDELDTQNFEKFDEADSQTRPSSKTGPWRKMLSSKDLNFVGYTYKNFEIVNDYQVPGMAELKKKPSKSKRPSIKSLFDSESETSELSEVSDTSASDRPQGSFLNLLPPKLEASHSERNLTHKS* 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2379 560 PANTHER SERINE/THREONINE-PROTEIN KINASE 1 527 - -
Mtr1g2379 560 MobiDBLite consensus disorder prediction 1 47 - -
Mtr1g2379 560 SUPERFAMILY Protein kinase-like (PK-like) 94 470 IPR011009 -
Mtr1g2379 560 ProSitePatterns Protein kinases ATP-binding region signature. 126 149 IPR017441 GO:0005524
Mtr1g2379 560 SMART pkinase_C_6 419 483 IPR000961 GO:0004674|GO:0005524|GO:0006468
Mtr1g2379 560 MobiDBLite consensus disorder prediction 9 29 - -
Mtr1g2379 560 SMART serkin_6 120 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g2379 560 ProSiteProfiles Protein kinase domain profile. 120 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g2379 560 MobiDBLite consensus disorder prediction 514 537 - -
Mtr1g2379 560 MobiDBLite consensus disorder prediction 281 302 - -
Mtr1g2379 560 Pfam Protein kinase domain 121 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g2379 560 Pfam Protein kinase C terminal domain 437 481 IPR017892 GO:0004674|GO:0005524|GO:0006468
Mtr1g2379 560 MobiDBLite consensus disorder prediction 499 513 - -
Mtr1g2379 560 Gene3D Phosphorylase Kinase; domain 1 118 447 - -
Mtr1g2379 560 ProSitePatterns Serine/Threonine protein kinases active-site signature. 239 251 IPR008271 GO:0004672|GO:0006468
Mtr1g2379 560 Gene3D Transferase(Phosphotransferase) domain 1 204 436 - -
Mtr1g2379 560 ProSiteProfiles AGC-kinase C-terminal domain profile. 419 491 IPR000961 GO:0004674|GO:0005524|GO:0006468
Mtr1g2379 560 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 1 527 - -
Mtr1g2379 560 Coils Coil 62 103 - -
Mtr1g2379 560 MobiDBLite consensus disorder prediction 498 560 - -
Mtr1g2379 560 CDD STKc_NDR_like 118 482 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2379 Mtr-Chr1 34319906 34330392 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2379 1 548 AGC Kinase Gene Family AT4G14350 75.956 0.0 847
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Mtr1g2379 Pkinase 1.4e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2379 K08790 - gmx:100820558 959.518
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g2379 1 34319906 34330392 Mtr1g2379 1 34319906 34330392 ECH
Mtr1g2379 1 34319906 34330392 Mtr7g2915 7 45930992 45937469 PCT