Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2378 ATGATGAAAGTAGGATTTGAAGTCCTTCATGCAAATCCAAACATGATTCATCCACACATGCATGAAACATGGGACTATACAATCATTACAAATGACTTATTATTGCCACCTCCAATCCAAACAAATCCTTATCCAAAACAACTAACTGAAAATCACTCCCTAAACTTGGGAGGACAGAATAATGAGGTAAGTGATTGGGTTGAACACTTTACTAAACACTTTGTTGAAGATCACTTACCACAAAACACTTCTGATAATAATAGTTACAATAATCTTCAACAAATTCAAACAAACACATCAGATTTAATTCAAAACCATAATAGTAATAGTGGTTATGAATGTGATCAAGGGTTGAATTTGATAACCCTTCTAATGGAATGTGCAGTGGCAATTTCAGTTGAAAATCATGGTGAAGCTCATAGAATGTTACTAGAGTTAACACAATTAGCTTCACCTTACAAAACATCATGTGCTGAACGTGTTGTTGCTTATTTTGCAAAAGCTATGATTAGTAGAGTGATGAATACATGGCTTGGAGCATGTTCTCCTTTGATTGATCATAGAACCATTCATTCTTCTCTGCAAGTGTTCAATAATATTTCCCCTTTCATCAAATTTTCACATTTTACTTCAAACCAAGCAATTCTTGAAGCGGTGAACCGTTGTAATAGCATTCATATCATTGATTTGGACATCATGCAAGGTCTGCAATGGCCTGCTTTTTTTCACATACTCGCGACTCGAATGGAGGGTAGGCCTTCAGTTCGAATGACGGGGATGGGAGCATCGATGGAACTTCTTGTTGAGACGGGGAAAAATCTTTCGAATTTCGCTAGAAGGCTTGGTTTGTGTTTAGAGTTTTACCCTATAGCATGTAAATTTGGTGAAGTTGTTGATGTTTCCATGTTACAAATTAGGCCTAATGAAGCACTTGCAGTTCATTGGTTGCAACATTCTTTGTATGATTCAACTGGACCTGATTGGAAAACTTTGAGACTTCTTGAAGAATTGGAACCAAAAATCATAACTTTAGTAGAACAAGATGTTAACATTGGAGGGTCATTTTTGGACCGTTTTGTTGGTTCATTGCATTACTATTCCACCCTTTTTGATTCACTTGGATCATATTTGCATAGTGATGATTCTAACAGGAACATTGTTGAACATGGTCTTCTATCTAAAGAGATCAACAATATATTAGCAATTGGTGGACCTAAAAGAAGTGGTGAAGAAAAGTTTAGGCTTTGGAGAAGTGAACTTGTTGCAAGAAATAGTTTTGAGCAGGTTCCAATGAGTGCTAATTCAATGGCTCAAGCACAGTTGATATTGAACATGTATTCACCAGCTCATGGTTATAGTCTTGCTCAAGTTGATGGCATGTTAAGGCTTGGTTGGAAAGATACTAGTTTGTATACAGCTTCTTCTTGGACTTGTAGAACTTCTAGGTAG 1449 0.3644 MMKVGFEVLHANPNMIHPHMHETWDYTIITNDLLLPPPIQTNPYPKQLTENHSLNLGGQNNEVSDWVEHFTKHFVEDHLPQNTSDNNSYNNLQQIQTNTSDLIQNHNSNSGYECDQGLNLITLLMECAVAISVENHGEAHRMLLELTQLASPYKTSCAERVVAYFAKAMISRVMNTWLGACSPLIDHRTIHSSLQVFNNISPFIKFSHFTSNQAILEAVNRCNSIHIIDLDIMQGLQWPAFFHILATRMEGRPSVRMTGMGASMELLVETGKNLSNFARRLGLCLEFYPIACKFGEVVDVSMLQIRPNEALAVHWLQHSLYDSTGPDWKTLRLLEELEPKIITLVEQDVNIGGSFLDRFVGSLHYYSTLFDSLGSYLHSDDSNRNIVEHGLLSKEINNILAIGGPKRSGEEKFRLWRSELVARNSFEQVPMSANSMAQAQLILNMYSPAHGYSLAQVDGMLRLGWKDTSLYTASSWTCRTSR* 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2378 482 Pfam GRAS domain family 120 477 IPR005202 -
Mtr1g2378 482 ProSiteProfiles GRAS family profile. 111 477 IPR005202 -
Mtr1g2378 482 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 15 478 IPR005202 -
Mtr1g2378 482 PANTHER OS05G0485400 PROTEIN 15 478 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2378 Mtr-Chr1 34315386 34317120 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2378 95 480 GRAS Transcription Factor Family AT3G54220 51.899 3.79e-131 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Mtr1g2378 GRAS 5.2e-101 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2378 - - cam:101494668 810.446
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g2378 1 34315386 34317120 Mtr1g2378 1 34315386 34317120 ECH