Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2369 ATGAAGTTCCAACGCTCAGGGGAGCAATTGGGAGGAACATATGAAACACAACCTTCATCTGAATCTCTTATCACCAGGGACTTCTTTTCAGGAAGTGATCATTCTTTCCTACCTGGAAAACTTGATCAGAAGTTGGACACCGGTAATATAGAAGAAGCAGAATTATCTTTGCGAGAAAGTGGCGTGTTAAACTATGAGGAAGCTAGAGCATTGCTAGGAAGATACGAGTATCAAAAAGGAAATTTAGTAGCTGCATTACATGTCTTTGAGGGAATAGATATAGGTGCTGTGACTCCTAAGATCAAAATTGCCCTTTCCAAAAATAGAGAACGCCGCAAGAAACATTCCCATAATCATGGTGAACCGGAAATGTCTATACATTCTGTTGGCTTACTGTTTGAAGCACTCTTTCTAAAAGCAAAATCATTGCAGGCTCTTGAAAGGTTTAAAGAAGCTGCCCAATCTTGCAAAGTTATTATGGACATAGTGGAATCTTCATTGCCTGAAGGCTTGCCTGATAACTTTGGTGCTGAATGTAAATTGCAGGAGACCGTGAGCAAGGCAGTTGAGCTGCTTCCAGAATTGTGGAAGCTTGCTGATTGTCCTCGTGAAGCTACTTTGTCTTACCGGCGAGCACTCCTTCATAAATGGAATCTTGATCCAGGGACTATAGCAAAGATTCAGAAAGAATTTGTTGTTTTTCTTCTATATAGTGGAGGAGAAGTAATGCCCCCTAATCTACGTTCTCAAATGGATGGCTCGTTTGTTCCGGGAAACAACATAGAAGAGGCTATACTTCTTTTGATGATTTTGCTCAGAAAAGTCACTCTCAATAGAATTGAATGGGATCCTTCAATTTTAGACCACCTTTCATTTGCTCTGTCTGTTTCGGGAGACCTATCGAGTTTAGCCAATCATTTGGAAGAATTACTCCCTGGGACTCTCCATCGAAGTGAAAGATTCCATGATCTAGCTCTTTGTAATTACGGAGCAGGTAAGGACTTGGTGGCACTGGATCTTTTAAGAAAATTGTTGACTGGTAGAGAAAGGCCGGAACACGTTCCCGGTTTGTTAATGGCTTCTAAGATTTGCTGCGAGAACCCTAGTCTTGCAGAAGAAGGGGTAAGTTTTTCTCAGAGAGCGCTTGAGAGCTTGGATGGAAGATGTAAGCAGTTAGAAAATGTTGCAAAATTCTATCTTGGTGTTTCATCATCGGCACACTCAAAATTGGCTGTTTCTGATTTCGAGAAGTTTAAGAGACAGTCTGAGGCACTTCAAGCCTTGGAAACTGCCGGCAGAACGACCGGAATGAGAGACCCTTTAGTACTATACCATCTCAGCTTAGAATATGCTGAACAAAGGAAGTTAAATGATGCACTTTATTATGCAAAGTGCGTCGTAAAACTGGAAGGTGGTTCTAACGTTAAAGGATGGTTACTGTTGGCACGGATATTATCTGCTCAAAAACAGTTTTTGGAGGCTGAATCCATTATCAACGCTGCTTTGGATCAGACTGGGAAATGGGATCAGGGTGATTTGTTGCGAACAAAAGCTAAAATTCAAATTGCACTTGGACAGTTAAAGAATGCCATTGAGACGTACACTCAGCTTCTTGCTGTTCTTCAAATTCAGAGCAAAAGTTTTGGTTCTTGGAAGAAGCTATATAAGGGTAACCGAGATCGTGCTAGGAACTTGGAAGTGGAAATATGGCATGATCTTGCTCATGTGTACATCAGCCTTTCCCAGTGGCATGATGCAGAGGCGTGTCTTTCAAAATCTAAGGCCATCAAGCCGTATTCTGCTTCTAGATGTCATGCACTAGGTATAATGTATGAAGCAAAGGGCCTTTACAAAGAATCTCTAAAAGCTTTTCGCGATGCTTTAGACATTGATCCTGGCCATGTCCGCAGCCTAATCTCCACTGCTGAAGTACTTAGACATTGCAGTAATAAATCAAATCCTGCAGTCAGAACTTTTTTGACGGATGCTCTACGGCATGACAGATTGAATGCTTCTGCTTGGTATAATCTTGGCCTTTTTCACAAGGCTGAGGGTAAAATATCATCATTAGTCGAAGCTACAGAATGTTTTCAGGCAGCCCACTCTCTTGAAGAATCTACTCCACTTGAACCTTTCAGATGA 2142 0.416 MKFQRSGEQLGGTYETQPSSESLITRDFFSGSDHSFLPGKLDQKLDTGNIEEAELSLRESGVLNYEEARALLGRYEYQKGNLVAALHVFEGIDIGAVTPKIKIALSKNRERRKKHSHNHGEPEMSIHSVGLLFEALFLKAKSLQALERFKEAAQSCKVIMDIVESSLPEGLPDNFGAECKLQETVSKAVELLPELWKLADCPREATLSYRRALLHKWNLDPGTIAKIQKEFVVFLLYSGGEVMPPNLRSQMDGSFVPGNNIEEAILLLMILLRKVTLNRIEWDPSILDHLSFALSVSGDLSSLANHLEELLPGTLHRSERFHDLALCNYGAGKDLVALDLLRKLLTGRERPEHVPGLLMASKICCENPSLAEEGVSFSQRALESLDGRCKQLENVAKFYLGVSSSAHSKLAVSDFEKFKRQSEALQALETAGRTTGMRDPLVLYHLSLEYAEQRKLNDALYYAKCVVKLEGGSNVKGWLLLARILSAQKQFLEAESIINAALDQTGKWDQGDLLRTKAKIQIALGQLKNAIETYTQLLAVLQIQSKSFGSWKKLYKGNRDRARNLEVEIWHDLAHVYISLSQWHDAEACLSKSKAIKPYSASRCHALGIMYEAKGLYKESLKAFRDALDIDPGHVRSLISTAEVLRHCSNKSNPAVRTFLTDALRHDRLNASAWYNLGLFHKAEGKISSLVEATECFQAAHSLEESTPLEPFR* 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2369 713 Pfam Tetratricopeptide repeat 602 633 IPR019734 GO:0005515
Mtr1g2369 713 SUPERFAMILY TPR-like 512 686 IPR011990 GO:0005515
Mtr1g2369 713 PANTHER PROTEIN NPG1 1 713 IPR043376 -
Mtr1g2369 713 SMART tpr_5 567 600 IPR019734 GO:0005515
Mtr1g2369 713 SMART tpr_5 475 508 IPR019734 GO:0005515
Mtr1g2369 713 SMART tpr_5 440 473 IPR019734 GO:0005515
Mtr1g2369 713 SMART tpr_5 671 707 IPR019734 GO:0005515
Mtr1g2369 713 SMART tpr_5 133 166 IPR019734 GO:0005515
Mtr1g2369 713 SMART tpr_5 511 544 IPR019734 GO:0005515
Mtr1g2369 713 SMART tpr_5 601 634 IPR019734 GO:0005515
Mtr1g2369 713 Coils Coil 524 544 - -
Mtr1g2369 713 Gene3D Tetratricopeptide repeat domain 258 543 IPR011990 GO:0005515
Mtr1g2369 713 Gene3D Tetratricopeptide repeat domain 545 709 IPR011990 GO:0005515
Mtr1g2369 713 PANTHER PROTEIN NPGR2 1 713 - -
Mtr1g2369 713 ProSiteProfiles TPR repeat profile. 601 634 IPR019734 GO:0005515
Mtr1g2369 713 SUPERFAMILY TPR-like 442 540 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2369 Mtr-Chr1 34215649 34219687 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2369 1 713 Calmodulin-binding Proteins AT4G28600 58.149 0.0 787
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2369 K21843 - gmx:100792009 1124.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g2369 1 34215649 34219687 Mtr1g2369 1 34215649 34219687 ECH
Mtr1g2369 1 34215649 34219687 Mtr7g2922 7 45997818 46004222 PCT