Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2348 ATGTCTACTGTGTCTAAAGATGAAAACTTGACACTTTCTTCTGAGGATTCTTCTAGCCCAGATGAGTCTGAGCTTGAATTGGGTCTTGGGTTAAGCCTTTCTCACCCTGCAAAATCACATAACTACCATCATCATGGTTCTTATGCTAGAATTTTCACTGCTAAGGATTTTTCTTCTTCTTCACCTTCCTCTGCTGGAACTAAAAGACCTGCTGATTCTCTTGATGCTACCAACCGTCCAAGTCAAGTAGTTGGATGGCCACCCCTTCGATCATATCGAGTGAATAGCTTTAATGCCAACGCTAAATCAACTGAAGCATTCAACTCTGTGGCCGAGAAGAGCAAGAATAATAATATTGTGGTAAGGAAGAGTACTGACAACGGAAATGATGATAACCACATTAATATCAAAGAAAAAAGAAACCTCAGGAAATCCCCGTTTGTCAAAGTAAATATGGATGGGATACCTATTGGAAGAAAGGTTGATTTGAGTGCTCACAGTTCCTATGAAACATTGGCGCAGACATTGGAGGACATGTTTGACGAATCAACTACAAGCGTCACTAGCAAAGGATCAAATGGGGAGGATCACAACATGACTACCAGAGGAGAAAGACATTCAATATTGTTGGATGGATCGTCCAAGTTTGTACTCACTTATGAAGACAAGGAAGGAGATTGGATGCTTGTTGGAGATGTTCCGTGGGGGATGTTCCTTAGTTCTGTGAGGAGGCTAAGAATCATGAGGACATCCGAGGCTAATGGACTAGCACCAAGATTGGAAGAAAAGAACAGCAGACAGAAAAGCAAGCCCATATAA 819 0.4164 MSTVSKDENLTLSSEDSSSPDESELELGLGLSLSHPAKSHNYHHHGSYARIFTAKDFSSSSPSSAGTKRPADSLDATNRPSQVVGWPPLRSYRVNSFNANAKSTEAFNSVAEKSKNNNIVVRKSTDNGNDDNHINIKEKRNLRKSPFVKVNMDGIPIGRKVDLSAHSSYETLAQTLEDMFDESTTSVTSKGSNGEDHNMTTRGERHSILLDGSSKFVLTYEDKEGDWMLVGDVPWGMFLSSVRRLRIMRTSEANGLAPRLEEKNSRQKSKPI* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2348 272 MobiDBLite consensus disorder prediction 1 40 - -
Mtr1g2348 272 Gene3D - 140 262 - -
Mtr1g2348 272 Pfam AUX/IAA family 48 259 IPR033389 -
Mtr1g2348 272 PANTHER AUXIN-RESPONSIVE PROTEIN IAA11 9 262 - -
Mtr1g2348 272 ProSiteProfiles PB1 domain profile. 145 252 IPR000270 GO:0005515
Mtr1g2348 272 MobiDBLite consensus disorder prediction 59 80 - -
Mtr1g2348 272 SUPERFAMILY CAD & PB1 domains 141 248 - -
Mtr1g2348 272 MobiDBLite consensus disorder prediction 59 87 - -
Mtr1g2348 272 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 9 262 IPR003311 GO:0005634|GO:0006355
Mtr1g2348 272 MobiDBLite consensus disorder prediction 1 18 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2348 Mtr-Chr1 34032119 34036098 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2348 138 259 B3 DNA Binding Superfamily AT1G59750 32.787 1.12e-13 68.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Mtr1g2348 AUX_IAA 8.8e-63 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2348 K14484 - gmx:100779400 367.851
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g2348 1 34032119 34036098 Mtr1g2348 1 34032119 34036098 ECH