Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2343 ATGGGTATTGCCCAATTTCTCGAAAAAATTTCAGCTTTATCAACTTCTGAATCTTCAGGATCGTTGCATATTCTTTCCAGCACGATTCTGGGATTGTCTGTATTGGAACTTGCAGCAATATGCGTGAACTTGACTCTTGTTCTGTTGTTTCTCTTTGTTGTCTCTGTTAGAAAGATTCTTGTGTACAAGAGAATTGGAATCGTTAAGGACAGTACTACCTCAAATGATAGTCCAATTTGCAGTGTTATTGATAGAGAAACGAGTGATGTTTCAATAGGTGTTTGGTTCAAGTTATCTGTGTTGTCTTGTTTCTATGTTTTGTTTGTGGAAGTTTTAGTGTTGAGTTTTGATGTAGGTGCTATCATTTGGGGTGAGGTTCTACACTGGTCACTTATTTCTGTGCCAGCTTCACAGGTTCTAGCTTGGTCTGTGTTAAGCTTCTCAGCTTTGAATTGCAAATTCAAGGTGTTAGAGAAGTTTCCATTTTTGTTAAGAGTTTGGTGGTTTTTGTCATTTGTTATTTGCTTGTGTACTTTATATGTTGATGGGAGAGGTTTTTGGTTGGAAGGTTCTAAGTACTTTCGTTCTCATGCTGTTGCGAATTTTGCTGTCACACCTGCACTTGCTTTTTTAGGCGCAGTTGCGGTTAATGGTGTTAGTGGTATACAAGTTAGTAGAAATTCCGATCTTCAAGAACTGTTAATTGTTGAAGAAGAGGAACTAGGGTGTCTCCAGGTTACTCCATATAGGGATGCTGGACTTTTTAGCTTAGCTACACTTTCTTGGTTGAATCCACTTCTTTCTATTGGTGCAAAGAGACCACTTGAGCTTAAGGACATTCCACTTGTTGCTCCAAGTGATAGAGCCAAGGCTAGTTACAAGGCTGTGAATTCTAACTGGGAGAAATTGAAGGCTGAAAATCAAAATTCGTCCAAGCAACCTTCATTAGCTTGGGCTCTTCTCAAGTCATTTTGGAAGGAAGCAGCTTTGAATGCTGTATTTGCTGGTATGAATACTTTGGTTTCGTATGTAGGTCCATACTTGATAAGTTACTTTGTTGATTTCTTGGGTGGGAAAGAGACTTTTGCTCATGAGGGTTATATCCTTACTGGTATATTCTTTGTGGCGAAGCTTGTGGAGACATTGACAACTAGGCAGTGGTATCTAGGAGTGGATATATTAGGTATGCATGTTAGGTCAGCTCTAACTGCCATGGTGTATAAGAAGGGACTCAGACTCTCGAGCTCGGCCAAGCAAAGTCACACTAGTGGTGAGATTGTCAATTACATGGCTGTTGATGTTCAGAGGGTAGGGGACTACTCTTGGTACATTCATGATATGTGGATGCTTCCTCTGCAGATTGTTCTTGCCCTTGTGATTTTGTATAAGAATGTTGGAATTGCTTTCGTTGCAACATTGATAGCTACAATCATTTCCATTGTTGTCACTGTTCCTGTGGCTAGGATACAAGAAGAATATCAAGACAAGTTAATGACTGCTAAGGATGAACGGATGAGAAAAACATCCGAGTGTCTGAGAAATATGAGGATTCTGAAGCTGCAAGCTTGGGAAGATAGATACAGAATAAAATTGGAGGAAATGCGCGGAGTAGAGTTCAAGTGGCTAAGGAAAGCACTTTACTCTCAGGCTTGTGTAACTTTCATATTTTGGAGTTCACCTATATTTGTTTCAGCAGTCACATTTGCTACAACCGTATTTTTAGGAACTCAGCTGACTGCAGGTGGTGTTCTATCTGCTCTAGCCACTTTCAGGATTCTTCAAGAACCTCTCAGAAATTTTCCTGATTTGGTATCAACCATGGCTCAGACAAAGGTTTCTCTTGATCGCATATCTGGTTTCCTGCAGGACGAAGAATTGCGGGAAGATGCAACTACTGTCTTGCCGCGTGGAACTTCTAACATTGTCATAGAAATTATGGACGGTGTCTTCTGCTGGGACCCTTCTTCCTCTAAGCCTACTCTTTCAGGAATACATATGAAAGTAGAAAGGGGGATGAGTGTAGCCGTTTGTGGCATGGTTGGTTCTGGGAAATCAAGTTTTCTTTCTTGCATCCTTGGAGAAATTCCCAAGCTTTCTGGTGAAGTAAGAGTGTGTGGTTCTGCGGCGTATGTCTCCCAATCAGCATGGATACAGTCAGGAAATATCGAAGAAAATATTCTGTTTGGAAACCCAATGAATAAACGAAAGTACAAGAATGTTATTCATGCTTGTTCACTGAAAAAGGACCTAGAACTTTTCTCACATGGAGATCAAACAATTATTGGTGATAGAGGTATAAATTTGAGTGGTGGACAGAAGCAGCGGATTCAGCTCGCACGGGCACTCTACCAAGATGCTGATATTTATCTCCTTGATGACCCCTTTAGTGCACTTGATGCCCACACTGGATCAGAATTGTTCAGAGAGTATGTGTTGTCGGAACTAGCAGATAAAACAGTTATTTTTGTGACCCACCAAGTTGAATTTCTTCCAGCTGCTGATATGATACTGGTTCTTAAAGAAGGCCAGATCATACAGGCAGGAAAGTATGATGACCTTTTACAGGCAGGAACAGATTTTAGATCTCTAGTTTCAGCTCACCATGAAGCAATAGAGGCAATGGACATTCCTACTCACTCATCCTCAGAAGATTCAGATGAAAATGAGTCGTTGGATGCACCTATTAGGACCAGTAAGAAATCTATTTCTTCTGTAAATGATATTGCCAGTTTGGCGAAGGAAGTTCACGAGGGATCGTCAGAAATAAAGGAAAAGAAGAAGGCAAAGCGCTCAAGAAAAAAACAGCTTGTTCAAGAAGAGGAGAGGGTTAGAGGTAGAGTCAGCATGAAGGTGTACCTGACCTACATGGCAGCCGCCTATAAAGGCTTACTGATTCCCCTCATAATCATTGCACAAACATTATTTCAGTTCCTTCAGATTGCCAGCAATTGGTGGATGGCTTGGGCGAATCCTCAAACAGAAGGAGACGAGCCCAAAGTAACTCCCACGACTCTTCTTCTTGTTTACATGGCCCTTGCCTTTGGCAGCTCATGCTTCATATTTGTTAGGGCCGTTCTCGTGGCTACATTTGGTCTAGCAGCTGCACAGAAGCTGTTTTTTAACATGCTTAGGAGTATTTTCCATGCACCAATGTCTTTCTTTGACTCTACACCAGCTGGAAGGATCCTGAATCGTGTTTCAATTGATCAAAGTGTTGTGGATCTTGACATTCCTTTTAGACTTGGAGGGTTTGCTTCATCAACGATACAACTTATTGGCATTGTTGCTGTAATGTCAGAAGTTACATGGCAAGTTTTGCTCCTAGTAGTCCCAATGGCAATTGTCTGTTTGTGGATGCAGAAATACTACATGGCTTCTTCAAGGGAACTTGTACGTATTGTAAGCATCCAGAAATCTCCAATTATACAACTTTTTGGTGAATCAATTGCTGGAGCAGCCACCATCAGAGGTTTTGGACAAGAAAAAAGGTTCTTGAAGAGGAACCTCTATCTTCTGGATTGTTTTGCACGACCATTCTTTTGCAGTCTTGCAGCTATTGAGTGGCTCTGCCTACGCATGGAATTGCTTTCAACTTTTGTATTTGCTTTCTGCATGGTATTACTCGTGAGCTTTCCCCGTGGAAGTATTGACCCCAGTATGGCTGGACTTGCTGTGACGTATGGCCTGAATTTAAATGGACGTTTGTCTCGCTGGATACTAAGCTTTTGTAAACTTGAAAATAAAATTATATCTATTGAAAGGATTTATCAGTACAGTCAAATTCCTAGTGAAGCACCACCACTTATTGAAGATTTTCGCCCTCCACCCTCATGGCCAGTGAATGGGACAATTCAACTAATTGATCTGAAGGTTCGTTACAAGGAAAATCTTCCCATGGTGCTTCATGGAGTATCCTGCACATTTCCTGGTGGGAAGAAGATTGGAATAGTTGGACGAACTGGCAGTGGCAAATCTACTTTGATTCAGGCGTTATTTCGATTGGTTGAACCAGCAGCCGGGAGTATCCTTATAGACAACATTGATATCTCGGGAATTGGCCTTCATGACCTTCGGAGCCATTTGAGTATCATACCACAAGATCCAACCTTATTTGAAGGCACCATTCGAGGCAATCTGGATCCTCTTGAAGAGCATTCTGATAAAGAGATTTGGGAGGCACTAGATAAGTCTCAGCTTGGAGAGATCATTCGTGAGAAAGGACAAAAGCTTGATACACCAGTGCTAGAAAATGGTGATAATTGGAGTGTAGGACAGCGGCAACTTGTTGCTCTTGGCCGAGCTCTGCTCAAGCAGTCAAAGATACTTGTACTTGATGAAGCAACAGCTTCTGTTGACAGTGCTACTGATAATCTTATCCAGAAGGTTATCCGAGAGGAGTTCAGAGACTGTACTGTGTGCACTATTGCTCATCGTATTCCTACTGTTATTGACAGTGATCTTGTCCTGGTACTCAGTGATGGTCTAGTTGCAGAGTTTGACACTCCATTGAGGCTATTAGAAGATAAGTCATCCATGTTTTTGAAGCTGGTGACTGAATATTCATCGCGATCAACTGGCATGCCGGATTTTTAA 4593 0.4159 MGIAQFLEKISALSTSESSGSLHILSSTILGLSVLELAAICVNLTLVLLFLFVVSVRKILVYKRIGIVKDSTTSNDSPICSVIDRETSDVSIGVWFKLSVLSCFYVLFVEVLVLSFDVGAIIWGEVLHWSLISVPASQVLAWSVLSFSALNCKFKVLEKFPFLLRVWWFLSFVICLCTLYVDGRGFWLEGSKYFRSHAVANFAVTPALAFLGAVAVNGVSGIQVSRNSDLQELLIVEEEELGCLQVTPYRDAGLFSLATLSWLNPLLSIGAKRPLELKDIPLVAPSDRAKASYKAVNSNWEKLKAENQNSSKQPSLAWALLKSFWKEAALNAVFAGMNTLVSYVGPYLISYFVDFLGGKETFAHEGYILTGIFFVAKLVETLTTRQWYLGVDILGMHVRSALTAMVYKKGLRLSSSAKQSHTSGEIVNYMAVDVQRVGDYSWYIHDMWMLPLQIVLALVILYKNVGIAFVATLIATIISIVVTVPVARIQEEYQDKLMTAKDERMRKTSECLRNMRILKLQAWEDRYRIKLEEMRGVEFKWLRKALYSQACVTFIFWSSPIFVSAVTFATTVFLGTQLTAGGVLSALATFRILQEPLRNFPDLVSTMAQTKVSLDRISGFLQDEELREDATTVLPRGTSNIVIEIMDGVFCWDPSSSKPTLSGIHMKVERGMSVAVCGMVGSGKSSFLSCILGEIPKLSGEVRVCGSAAYVSQSAWIQSGNIEENILFGNPMNKRKYKNVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRIQLARALYQDADIYLLDDPFSALDAHTGSELFREYVLSELADKTVIFVTHQVEFLPAADMILVLKEGQIIQAGKYDDLLQAGTDFRSLVSAHHEAIEAMDIPTHSSSEDSDENESLDAPIRTSKKSISSVNDIASLAKEVHEGSSEIKEKKKAKRSRKKQLVQEEERVRGRVSMKVYLTYMAAAYKGLLIPLIIIAQTLFQFLQIASNWWMAWANPQTEGDEPKVTPTTLLLVYMALAFGSSCFIFVRAVLVATFGLAAAQKLFFNMLRSIFHAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRLGGFASSTIQLIGIVAVMSEVTWQVLLLVVPMAIVCLWMQKYYMASSRELVRIVSIQKSPIIQLFGESIAGAATIRGFGQEKRFLKRNLYLLDCFARPFFCSLAAIEWLCLRMELLSTFVFAFCMVLLVSFPRGSIDPSMAGLAVTYGLNLNGRLSRWILSFCKLENKIISIERIYQYSQIPSEAPPLIEDFRPPPSWPVNGTIQLIDLKVRYKENLPMVLHGVSCTFPGGKKIGIVGRTGSGKSTLIQALFRLVEPAAGSILIDNIDISGIGLHDLRSHLSIIPQDPTLFEGTIRGNLDPLEEHSDKEIWEALDKSQLGEIIREKGQKLDTPVLENGDNWSVGQRQLVALGRALLKQSKILVLDEATASVDSATDNLIQKVIREEFRDCTVCTIAHRIPTVIDSDLVLVLSDGLVAEFDTPLRLLEDKSSMFLKLVTEYSSRSTGMPDF* 1531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2343 1530 CDD ABC_6TM_ABCC_D2 965 1259 IPR044726 GO:0140359
Mtr1g2343 1530 Pfam ABC transporter transmembrane region 967 1209 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr1g2343 1530 Pfam ABC transporter transmembrane region 332 597 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr1g2343 1530 MobiDBLite consensus disorder prediction 874 896 - -
Mtr1g2343 1530 PANTHER MULTIDRUG RESISTANCE PROTEIN ABC TRANSPORTER FAMILY PROTEIN 69 1530 - -
Mtr1g2343 1530 Coils Coil 922 942 - -
Mtr1g2343 1530 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 967 1237 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr1g2343 1530 CDD ABCC_MRP_domain1 643 843 - -
Mtr1g2343 1530 MobiDBLite consensus disorder prediction 874 894 - -
Mtr1g2343 1530 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1284 1518 IPR003439 GO:0005524
Mtr1g2343 1530 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 643 865 IPR027417 -
Mtr1g2343 1530 SMART AAA_5 1310 1495 IPR003593 -
Mtr1g2343 1530 SMART AAA_5 670 851 IPR003593 -
Mtr1g2343 1530 ProSitePatterns ABC transporters family signature. 768 782 IPR017871 GO:0005524
Mtr1g2343 1530 CDD ABCC_MRP_domain2 1282 1502 - -
Mtr1g2343 1530 Gene3D - 641 873 IPR027417 -
Mtr1g2343 1530 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 69 1530 - -
Mtr1g2343 1530 SUPERFAMILY ABC transporter transmembrane region 964 1264 IPR036640 GO:0005524|GO:0016021
Mtr1g2343 1530 Gene3D - 1268 1520 IPR027417 -
Mtr1g2343 1530 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 643 866 IPR003439 GO:0005524
Mtr1g2343 1530 CDD ABC_6TM_ABCC_D1 330 617 IPR044746 GO:0140359
Mtr1g2343 1530 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1275 1513 IPR027417 -
Mtr1g2343 1530 SUPERFAMILY ABC transporter transmembrane region 318 625 IPR036640 GO:0005524|GO:0016021
Mtr1g2343 1530 Pfam ABC transporter 1301 1449 IPR003439 GO:0005524
Mtr1g2343 1530 Pfam ABC transporter 661 795 IPR003439 GO:0005524
Mtr1g2343 1530 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 329 609 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr1g2343 1530 Gene3D ABC transporter type 1, transmembrane domain 294 625 IPR036640 GO:0005524|GO:0016021
Mtr1g2343 1530 Gene3D ABC transporter type 1, transmembrane domain 926 1265 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2343 Mtr-Chr1 33991047 34000249 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2343 614 859 Calmodulin-binding Proteins AT2G36910 29.389 1.83e-19 93.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2343 - - cam:101514243 2620.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g2343 1 33991047 34000249 Mtr1g2343 1 33991047 34000249 ECH
Mtr7g2954 7 46341744 46349637 Mtr1g2343 1 33991047 34000249 PCT