Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2341 ATGGCGCTATGGATGGAAAAGGGTTCGGAGCCTTTAACCGAAAACGAGAAAGCAGACCTTGAAGCCATTGCTGCTATCAAAGAATCTTCAGCTTTAGAACTCAAGGAAAAGGGTAACCAATATGTGAAGATGGGTAAGAAGCATTACTCTGATGCCATTGATTGCTACACAAGGGCAATTGATCAGAAAGCTTTGACTGATTCTGAGACTTCTGTTCTTTTTTCAAATAGAGCCCATGTTAATTTGCTACTTGGAAACTTTAGAAGGGCTCTTAATGATGCTAATGATTCAATCAAGTTGTCCCCTTCAAATATAAAGGCAATTTATAGAGCTGCTAAAGCTTCCTTTTCGTTGAATTTGTTGGATGAAGCACAAGACTATTGTCAAATGGGTCTTCATTTGGACCCCAAGAATGAGGAATTGAAGAGGCTTGATAAGCAGATTGAAACTAAAATACTGGAGAATGAAAAACATGAGGCTGAAGTTTCTAACGCCATTGCAGAGGCAAAGGAACTTGCTTCTGCGATAGAAAATAGAGGCTTGAAGATTGGGAAGGCTATGTATCGAGAACTTACTGGGTTAAGGAAACCTGTGTTTGACAAAAGTAACATCCTTCATTGGCCTGTTCTTCTTTTGTATGCAGAAGTTATGTCCAGTGACTTCATTGAGGATTTCTGCGAGACCGACATGTTTACGGTTCACCTTGATATGGTATTTTCAGAAGATCAACCGCTTCCATGGGATGTTAAAAACAATTACAAACGTGAATTTATTGAGTTATACTACGAGGCTGGTTCTGGACCTCGTCTATCTAAGCAAAAACTCCTTCATTATCTATTAGAGGGAACTCCAGCAGCTTCCAGTGGGGAAGTTATTGGCGATGAAGTAAAAGATGCAGTTGAGGATTTTAAGCAAAACAAAAGCTCCCCGAAATGGATCAAAGTCAATGAGAGGAGAACACTCCATGATGTTCTGAAAGAGCCCAATTTCATCATTCCCGAGATCCCAGTCTTCTATGTTGTTTCTAAGCAATCCAGCTTTTATAGCAAATTCAAAGATGGAAAGTGGGCTCCTCCAAGTGTATGA 1086 0.3996 MALWMEKGSEPLTENEKADLEAIAAIKESSALELKEKGNQYVKMGKKHYSDAIDCYTRAIDQKALTDSETSVLFSNRAHVNLLLGNFRRALNDANDSIKLSPSNIKAIYRAAKASFSLNLLDEAQDYCQMGLHLDPKNEELKRLDKQIETKILENEKHEAEVSNAIAEAKELASAIENRGLKIGKAMYRELTGLRKPVFDKSNILHWPVLLLYAEVMSSDFIEDFCETDMFTVHLDMVFSEDQPLPWDVKNNYKREFIELYYEAGSGPRLSKQKLLHYLLEGTPAASSGEVIGDEVKDAVEDFKQNKSSPKWIKVNERRTLHDVLKEPNFIIPEIPVFYVVSKQSSFYSKFKDGKWAPPSV* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2341 361 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 4 1 357 - -
Mtr1g2341 361 SMART tpr_5 71 104 IPR019734 GO:0005515
Mtr1g2341 361 SMART tpr_5 105 138 IPR019734 GO:0005515
Mtr1g2341 361 SMART tpr_5 31 66 IPR019734 GO:0005515
Mtr1g2341 361 Gene3D Tetratricopeptide repeat domain 25 157 IPR011990 GO:0005515
Mtr1g2341 361 SUPERFAMILY TPR-like 21 147 IPR011990 GO:0005515
Mtr1g2341 361 Coils Coil 141 175 - -
Mtr1g2341 361 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 4 1 357 - -
Mtr1g2341 361 Pfam Cns1/TTC4 Wheel domain 202 267 IPR044059 GO:0051879
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2341 Mtr-Chr1 33972914 33976595 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2341 30 160 Calmodulin-binding Proteins AT3G25230 30.282 1.99e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2341 K24927 - gmx:100783179 591.652
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g2341 1 33972914 33976595 Mtr1g2341 1 33972914 33976595 ECH