Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2340 ATGGCTACTCAAGGACAAGTTATCACCTGCAAAGCTGCGGTGGCCTGGGAACCCAACAAACCACTGATCATCGAGGACGTTCAAGTGGCTCCACCTCAGGCTGGTGAGGTTCGAATCCAAATTCTTTTCACTGCTCTCTGTCACACCGATGCTTACACTTGGAGCGGCAAGGATCCTGAAGGTCTTTTCCCATGTATACTTGGTCATGAAGCTGCTGGGATTGTGGAAAGTGTTGGAGAAGGTGTTACTGAAGTTAAGCCAGGGGATCATGTCATCCCTTGTTACCAAGCTGAATGTGGAGAATGTAAGTTTTGCAAATCAGGCAAAACCAATCTTTGTGGCAAAGTTCGTTCTGCAACTGGAGTTGGAGTCATGATGAGTGATCGCCAGAGTCGCTTCTCCGTCAATGGAAAGCCTATCTATCATTTTATGGGAACCTCCACTTTTAGTCAATACACTGTTGTCCATGATGTTAGTGTGGCTAAGATTGACCCAATAGCTCCTTTGGACAAAGTTTGTCTCCTTGGATGTGGTGTTCCAACTGGCCTTGGAGCTGTCTGGAATACTGCAAAGGTGGAAGCAGGGTCAATTGTCGCTGTTTTCGGTCTTGGAACTGTCGGGCTTGCTGTTGCTGAGGGTGCAAAAGCTGCAGGTGCATCAAGGATTATTGGCATAGATATTGATAGTAATAAGTTTGAAAGAGCGAAGAACTTTGGAGTGACTGAGTTTATTAATCCAAAAGAACATGAGAACCCAATTCAGCAGGTCATAGTTGATCTCACAGATGGTGGAGTTGATTATAGTTTTGAGTGCATTGGAAATGTCTCTGTAATGAGGGCTGCTTTGGAATGCTGCCATAAGGGGTGGGGGACATCAGTTATTGTAGGTGTTGCAGCATCAGGGCAAGAAATATCAACTCGACCTTTTCAGTTGGTAACTGGACGCGTCTGGAAAGGAACAGCTTTTGGTGGCTTCAAGAGCCGATCACAAGTGCCTTGGCTTGTAAACAAGTACTTAAACAAGGAAATCAAGGTTGATGAATACATTACTCACAATTTGACTCTTGCGGATATCAACAATGCATTTGACCTCATGCATGAAGGAGGATGCCTCCGTTGTGTGCTTGCAATGCATGCATGA 1140 0.4526 MATQGQVITCKAAVAWEPNKPLIIEDVQVAPPQAGEVRIQILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVKPGDHVIPCYQAECGECKFCKSGKTNLCGKVRSATGVGVMMSDRQSRFSVNGKPIYHFMGTSTFSQYTVVHDVSVAKIDPIAPLDKVCLLGCGVPTGLGAVWNTAKVEAGSIVAVFGLGTVGLAVAEGAKAAGASRIIGIDIDSNKFERAKNFGVTEFINPKEHENPIQQVIVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVNKYLNKEIKVDEYITHNLTLADINNAFDLMHEGGCLRCVLAMHA* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2340 379 Pfam Zinc-binding dehydrogenase 206 327 IPR013149 -
Mtr1g2340 379 Gene3D - 182 320 - -
Mtr1g2340 379 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 68 82 IPR002328 GO:0008270|GO:0016491
Mtr1g2340 379 SUPERFAMILY GroES-like 326 375 IPR011032 -
Mtr1g2340 379 Pfam Alcohol dehydrogenase GroES-like domain 35 162 IPR013154 -
Mtr1g2340 379 SUPERFAMILY GroES-like 3 198 IPR011032 -
Mtr1g2340 379 PANTHER ALCOHOL DEHYDROGENASE 3 377 - -
Mtr1g2340 379 TIGRFAM adh_III_F_hyde: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 10 377 IPR014183 GO:0006069|GO:0008270|GO:0051903
Mtr1g2340 379 CDD alcohol_DH_class_III 8 375 IPR014183 GO:0006069|GO:0008270|GO:0051903
Mtr1g2340 379 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 168 341 IPR036291 -
Mtr1g2340 379 PANTHER S-(HYDROXYMETHYL)GLUTATHIONE DEHYDROGENASE 3 377 - -
Mtr1g2340 379 Gene3D - 13 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2340 Mtr-Chr1 33966807 33970868 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2340 10 331 Monolignol Biosynthesis Gene Families AT1G72680 26.444 1.17e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2340 K00121 - jre:109020545 726.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g2340 1 33966807 33970868 Mtr1g2340 1 33966807 33970868 ECH
Mtr7g2970 7 46530859 46533404 Mtr1g2340 1 33966807 33970868 PCT