Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2315 ATGAATTACCATGTTCCAGATTTCGATATTCAAATGGATGATGAAGATGAATACCCTATACATCATTCAAAGAAACCTTTCACGCAACAAGACGATGAGATCATGGAACTATTATGGCAAAATGGACAAGTTGTGATGCAAAGCCAAAACCACCGCCAATTTAGAAAACCGCTGGCACCGGCAACCACAACCACCGCCAGTCGCGTGATTCCTGAACATAGAGAGATTCGATCAACCGATGCAGATAACTACATGAATCAACACTTGTTCATGCAAGAAGATGAAATGGCATCGTGGCTTTTTGATTCAATGAATGAAGTTGAAGATCCTCCTTTCAACCGTCACGATTTTAGTTCAGAAACAATTTTTCATTCATCAGCCGGAAGCGCCGGTCAGAAACACGGCGGCGGTGTTATACAAGCACAAGCCACGGTTCGTGAGTCGGAGTTTGTTCGGCAATCGAGACCGGCGGTGGTGGCAGCTTCTCGGCCTCCTATTCATCCGGCGAGGAAACCGGAGATGGTGGTGAATAGAACACATAATTTCACGCATTTCACTAATACGAACCAAAGCAATACGAGGAGTGAACCAGGTGCATCTTCGAGTTCGATGATTGCGGCGGGAAGAGAATCAACGGTGGTAGATTCATGTGATACGCCGATCATGACAGCGAAGACGTACGCAGCTTCGAGATTATCGGAAACTGTCAGGAGTGCGACGGCGGAGACCGGATGTGTGAGTGTGAGTACCACTGGTAAAGCGGCGACGACGACGTTGGATATGACAGTTACGTCGTCACCTGGTTGCTCTAGCGGGAGTGCTGAACCGGTTCATAGAGAACCGGAGTTGGACCGTAAAAGGAAGGGACGTGAACCGGAAGAATCTGAGTTTCAGAGCGAGGATGTCGATTTTGAATGTCGGGAAGAAAAAAAACAACACCGTGGATCTACATCCGCAAAGAGATCCCGTGCTGCAGAGGTTCATAATCTCTCAGAGAGGAAGCGTCGAGATAGAATTAACGAAAAGATGAAAGCTTTGCAAGAACTTATACCGCGGTGCAACAAGTCTGACAAAGCTTCAATGTTGGATGAAGCAATCGAATACTTGAAGTCATTGCAGTTACAAGTGCAGATGATGTCCATGGGATGTGGCATGGTACCTATGATGTTTCCTGGAATTCAGCAATTTATGCCGGCGATGGGAATGGGGATGGGAATGGGTTTAGGGATGGAAATGGGAATGGGAATGAACAGACCAGTGATGCCATTTCCTAATATGTTGCCTAATTCTCCTTTGCAAACAGCAGCAACTGTAGCTGGTCCTTTTGGACCAAGGTTCGCTATGCCTCCTTTCCATGTGCCCCATGTTCCTGCAGCTGCACCTGATTCATCCAGAATGCAAGCAGAAAATCAATCAGATAACCACCTTAACTCCCTTGGTGCTCTGCCTCCAGATCAATCACGCATTCCAAACCCAAACTTCGCAGATCCTTACCAGCAATACCTCGGTCCCCACCAGGTGCAACAATTAATGCAGGCAATGAACCAGCAAAATGTCAACAGACCAGGTACCAGTGGGAGCCAAGAAAATCCAGAAAAGCATTAG 1605 0.4698 MNYHVPDFDIQMDDEDEYPIHHSKKPFTQQDDEIMELLWQNGQVVMQSQNHRQFRKPLAPATTTTASRVIPEHREIRSTDADNYMNQHLFMQEDEMASWLFDSMNEVEDPPFNRHDFSSETIFHSSAGSAGQKHGGGVIQAQATVRESEFVRQSRPAVVAASRPPIHPARKPEMVVNRTHNFTHFTNTNQSNTRSEPGASSSSMIAAGRESTVVDSCDTPIMTAKTYAASRLSETVRSATAETGCVSVSTTGKAATTTLDMTVTSSPGCSSGSAEPVHREPELDRKRKGREPEESEFQSEDVDFECREEKKQHRGSTSAKRSRAAEVHNLSERKRRDRINEKMKALQELIPRCNKSDKASMLDEAIEYLKSLQLQVQMMSMGCGMVPMMFPGIQQFMPAMGMGMGMGLGMEMGMGMNRPVMPFPNMLPNSPLQTAATVAGPFGPRFAMPPFHVPHVPAAAPDSSRMQAENQSDNHLNSLGALPPDQSRIPNPNFADPYQQYLGPHQVQQLMQAMNQQNVNRPGTSGSQENPEKH* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2315 534 MobiDBLite consensus disorder prediction 464 481 - -
Mtr1g2315 534 Pfam Helix-loop-helix DNA-binding domain 327 373 IPR011598 GO:0046983
Mtr1g2315 534 MobiDBLite consensus disorder prediction 457 534 - -
Mtr1g2315 534 MobiDBLite consensus disorder prediction 258 336 - -
Mtr1g2315 534 MobiDBLite consensus disorder prediction 258 272 - -
Mtr1g2315 534 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 1 534 IPR031066 -
Mtr1g2315 534 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 1 534 - -
Mtr1g2315 534 MobiDBLite consensus disorder prediction 277 295 - -
Mtr1g2315 534 MobiDBLite consensus disorder prediction 185 205 - -
Mtr1g2315 534 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 321 389 IPR036638 GO:0046983
Mtr1g2315 534 MobiDBLite consensus disorder prediction 303 336 - -
Mtr1g2315 534 Coils Coil 329 349 - -
Mtr1g2315 534 MobiDBLite consensus disorder prediction 502 527 - -
Mtr1g2315 534 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 323 372 IPR011598 GO:0046983
Mtr1g2315 534 Gene3D - 318 381 IPR036638 GO:0046983
Mtr1g2315 534 CDD bHLH_AtPIF_like 323 386 - -
Mtr1g2315 534 SMART finulus 329 378 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2315 Mtr-Chr1 33650944 33659499 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2315 1 378 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 38.791 7.07e-58 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr1g2315 HLH 1.1e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2315 - - mtr:MTR_1g069155 1033.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g2315 1 33650944 33659499 Mtr1g2315 1 33650944 33659499 ECH
Mtr7g2990 7 46775123 46779596 Mtr1g2315 1 33650944 33659499 PCT